Detail information of BGIOSGA028122_circ_g.1


General Information
CircRNA Name BGIOSGA028122_circ_g.1
ID in PlantcircBase osi_circ_018281
Alias Chr08:5192146_5196856(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr8: 5618778-5623487  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRCexplorer2
Parent gene BGIOSGA028122
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA028122_circ_g.2
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered BGIOSGA028122-TA:8
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGGTCATGGTGCCATAGCTCCTCATCGTGGAAAATTCTATGGAATTCTCAATGGAATTGATCCA
GATATCTGGGATCCATATACTGATAACTTCATCCCGgttcatatacctgaaaaggcctttgtat
tggactgggtttttgctgacgggccacctggaaatgcaaggaattatgacaacaatggtcgaca
agattttc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTTCATATACCTGAAAAGGCCTTTGTATTGGACTGGGTTTTTGCTGACGGGCCACCTGGAAATG
CAAGGAATTATGACAACAATGGTCGACAAGATTTTCATGCTATTCTTCCAAATGCCATGACTAA
CGAAGAATATTGGGTTGAAGAGGAAAACTGTATCTATACAAGGCTTCTCCACGAGATCAGAGAA
CGGGAGGAAGCTATTAAAATAAAGGTCAGTCAAAATAGAATCTTTAAATATGGACTTGGTTATT
TGATCCAGAGTTTTACAACATGGTTCTGATGTATTTTGTTGGCTGACGAATTCTCTAGCAATTG
TTCTATTTGTAATTAACTTGCGTAGAGCTAATGAACTTCACATGTGAAATCAGGTTTTTGACCA
ACCGATTACCTTCTTTTTTTTTGCGGGGATGTTTTTGACCAAATAAGTTACTATTTCACATCCT
AAGACATGTTATAAAATTCATCCAAACTCAGTATTCTTTCAAATATACCATAATTAATTTGACC
AGTTAGATCATTCTTCACTTTGAACTTGTGCCTTAAGCTGACTGTTTTGACCAAACGAATTGAT
GGCCCACCCAGTTAGCAGTTAGCACTATTTATTGGAACTTCTGTTATACCATATTATATTATTC
AAGGAAAAATGTAGTTGTTCACTGTCATGTATATATCTTGATGTTTTGAACATCAGATATATGT
TGTGAAGTCCTTTGGCTTACTATTCCCACTTTTTTGCTTGTACAGGTTGAGAAAAGAGCAAAAA
TGAAATCTGAGATGAAGGAAAAGACTATGAGAATGTTTCTACTTTCTCAGAAACACATTGTTTA
TACTGAACCACTTGAAATACATGCTGGAACAACTGTGGATGTTCTATATAATCCTTCTAATACG
GTGCTAAATGGAAAGCCAGAGGTTTGGTTTAGGTGGTCCTTTAACCGATGGATGCATCCAAGTG
GTGTTTTACCACCCAAGAAGATGGTGAAAACAGAAGATGGTTGTCACTTAAAAGCGACAGGTTT
GAGCTTGACTTGTTACATTGTTCCTTTTAATGCTGATAGATTTATATGATACATGTACTGATGT
GCACTTTTATCCATTAATATATATTATTAAGTGCTACTGGACCATTAATTGATCAAGCACTGTT
GAAGTATATGTCTAGCAATGTTCCAACTTTGATCCATAAATGGTATCTAGTACCAATTTTGAAA
CCTGAATCACAAGGTGACATAATTATACTATTCTGAAGAGCTAGCTAGTTTAGTGCCTAAATGA
GCTACGACAATTCTGTAACTGGAGTTTTCTAGATGTTATAACTGCAAAAAATCTAGCTGGTTTA
CTGTAGACATAATTCATTATAATATCTAGTATATCGCAGTCTAACCCAGAAGAGCTCAAAATTT
CAAACTACTTGGATTATTACTCAACTCTTGGTAAAAGGTGGCAATTTGGTGATTAAACTCAATA
ATGTCCTGTCAAAATTTACCTTTTATGTTTAACTTATTTTGGAACTTTGGTTGGTATATCGTTC
AGTTTACTCAATATTACAGTGTAATACATTTTTTCCCTTCCATATTCATTAGTCCCTGTTATGT
TCCTTCTCCAGTTAGTGTTCCATCGGATGCTTATATGATGGACTTTGTTTTCTCTGAGTCGGAA
GAAGGTGGAATCTATGACAACAGGAATGGGACAGACTATCATATTCCTGTTTCTGGTTCCAATG
CAAAGGAGCCTCCCATTCATATTGTCCATATAGCGGTTGAGATGGCACCCATTGCAAAGGTAAG
CCATATTACCATGTGAAATTTTCTGTGGCTAGCAACAGTGCTAGACATCAACACTTGCCAAGTT
ATCTGTTATTTCTATGTGCATAAAGTAATGCCATACCCTGTAATCTCCAATTACAGGTTGGAGG
CCTTGCTGACGTTGTCACAAGTCTTTCACGTGCAATTCAAGAGTTAGGCCATCATGTTGAGGTT
ATTCTCCCGAAATATAATTTTATGAATCAAAGCAATGTAAGTTCAAGTAGCACAACAGCCTATG
TTTCTCCTATTATATAATATATTATTTATTTATTTTCGGTTTCTGTGGTGGTTTTGTCGCTAAG
AAACTCAAATCGAAGAGCTCTCTATTTTAAGAGAGTCTATTACGATACTGTATATGGATGTGCT
CCGTGTTGTCCTTCCTTTCTCAGTTAGTTAGGATTTGTGTTAGATATGTGGATTGCTGTCAAAT
ATTTGAAATGTACCTTAATATATCATATACAGTTCTAGTTTTAAATTTTGTATTATTTGAAAAA
AAATAACTTTTTCATGTCTTGTCCTTGATGCACAAGAACTATGGAGGCAAAGAGGACTTGTCAA
GTGTAGCAGAGAACTCAAGAATATAGAAAAGTGGATTTTATATCTTGTATGAACCATGTTTCAT
CCGTTTCAATGCAGGTGAAGAATTTGCATGTACGTCAAAGCTTTTCTTTGGGTGGTACAGAAAT
TAAAGTGTGGTTTGGACTAGTTGAAGACCTGTCTGTTTACTTCTTGGAACCTCAAAATGGGTAT
GTTGCATCTCATTCTTCACACAAACATAGCTATTAGTCTATTACTCTTGTTTCACGAAAACCAT
CATCCCTAATCCTTATACTAGCTAATGCACAGTTCACTAAGCCTAAGATGCAGGGTATGATATC
CTTCTAAAAACCAATTGTTGGTTCCTGTCGAGTACAAGAGCTAACTTAGTACTCCCTCTGTTTT
TTAATAGATGACGCCGTTGACTTTTTCTCACATGTTTGATCATTCGTCTTATTCAAAAATTTTA
TGCAAATGTATACGATATAAATCACACTTAAAGAACTATGAGTGATAAAACAACTCATAACAAA
ATAAATTATAATTCCGTAAATATTTTGGATAAGACGAATAGTCCAACATGTGAGAAAGTCAACG
GCGTCATCTATTAAAAAACGGAGGTAGTACCAGTTATTCAAACCTTGGCCAGTTTAGGCCCTTA
CTTCTTTTGATCCCTCCTTCCACTGCAGTATGCATATTATTATTTTTTTTCAAGTATGTGATAC
AAATCTGAAATCTAAATATAAGAATTAAAGGTACAATCACCAAATGCAACCCACCAGAAGTATA
ATGATTTCGATTTTTTTTTTCATTTGTAGTCTTCAATATCATTCTCTTTCTTTGTTTCCATGTC
TTGCCTCAGCTGGTAGTCTGAGCAGAATAGTTCTGTTCTAAGCTTAGATTGCAAAATTGTTTTT
GAGAATCCATGTAATGTGTTTTGCCGCTCCTTAGCATGGATGGTGGTTTAAATCTTTTCCCTTA
ATACGAAGATATGCAAATCTTTTTCTTAGTTTGGGTCGCAAAATTGTTTGTGATTTTTTTGAGA
ATGTTATGCACTGATCATGATTCTACTTCAGTTATTAGAATTGGTATCTTTAGTCCTCTAACCT
TGACCAAACAATTGTGACCTATTCAGCTCTTTGACAAGGCATAAGGACCTAGCCAGGGTTAAAG
AGTTTGCTGGTTCGAGCTCAAATCAGGAGATCTGAGAACAACCTGGCCTTGCCCTTTCTCAGCC
TATATTGGCCTTTACTGGGAACACAAATTGCTTGGGTAGCATTAGTATTTAGCTAGTTTATATT
TATTTCGATTTTTGCTCTACCATATCCATGAACTGCAAGTTCTCTACACAACTTCATGGCGCTG
AATTGACAGAAGAACATTTGTAAGATGCACCAGGGCTTAGGTGATTACACCACACTGTACTATA
ATTCATACACATGCTAGTATAATTATTTACTCCTGACTGGTTCAGTTCCTGTATGATGATTTCA
GTTATCGCAGGAACTGTTTTGGAGATTGTTTCCTTGTAGGAGGCTTCACAGAATAATCAATTTG
GCATATCTTGTGGCAGGATGTTTGGGGGTGGATGGGTATATGGAGGGAACGATGCTGGCAGATT
TGGCTTGTTCTGTCAGTCTGCTCTAGAGTTCCTCCTTCAGAGTGGATCTTCTCCAGTAAGTATT
TCTCTAATTGAAAACTTCCAAGTCCAAAATCAGTGATAAAAGAGAATTTTTTACTTTTGGTAAT
AAATATATTGTTTTTTCCTCTTGATATTTTCTTCACGCTCTTGTTTTCCATGCTTGCATTTCAT
TATGTCAAAACATGTTTAAGTCACTGACTTATTTGCTGCATTAGCCTTTTCTTTCCCAGTCACT
TTTTCACCTTACATTCACTTTACTCCTCTTTTCAAAAAGAGTGACATTTTATCATCCTGACAGC
ATATAATACACTGCCATGATTGGTCAAGTGCACCAGTTGCCTGGCTATACAAGGAACACTATGC
AGAATCCAGGTTGGCAACTGCCCGGATTATATTTACCATCCATAATCTTGAGTTTGGAGCACAT
TTTATTGGAAAAGCAATGACATACTGCGACAAAGCCACAACTGTGAGTGACTGATTGTCTTGAA
GAGTTTTATCATCTAGTTTGGTGCATTTTCATGTTATATGAAAAATAAAATTATTTTCATATGT
TCAAACATCTTCATGTCTGTCTTGCCATACCTTGCAGGTTTCTCACACGTATTCAAAGGAAGTC
GCAGGTCATGGTGCCATAGCTCCTCATCGTGGAAAATTCTATGGAATTCTCAATGGAATTGATC
CAGATATCTGGGATCCATATACTGATAACTTCATCCCG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021