Detail information of Os05g0571100_circ_g.1


General Information
CircRNA Name Os05g0571100_circ_g.1
ID in PlantcircBase osa_circ_042193
Alias NA
Organism Oryza sativa
Position chr5: 28465040-28465216  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRI-long
Parent gene Os05g0571100
Parent gene annotation Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 domain co
ntaining protein. (Os05t0571100-01);Peptidase C12, ubiquitin car
boxyl-terminal hydrolase 1 domain containing protein. (Os05t0571
100-02)
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues leaf
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered Os05t0571100-02:1
Os05t0571100-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTTGCGGCGTAGTTCATGAGATTTTGAGCCTGACACTTGAGAAGCGCACGCTGGTGGATCATCT
GACACACTTCCGGGAGGAATTCCGggttgcgcaattcaaggaaatgccatacatttcgccgtac
tctgacttctcgcatctgcgatccgggtcggctgagaaggagaagcatg
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 177
Transcript exons: 28465040-28465216
GGTTGCGCAATTCAAGGAAATGCCATACATTTCGCCGTACTCTGACTTCTCGCATCTGCGATCC
GGGTCGGCTGAGAAGGAGAAGCATGCTTGCGGCGTAGTTCATGAGATTTTGAGCCTGACACTTG
AGAAGCGCACGCTGGTGGATCATCTGACACACTTCCGGGAGGAATTCCG

Genomic sequence GGTTGCGCAATTCAAGGAAATGCCATACATTTCGCCGTACTCTGACTTCTCGCATCTGCGATCC
GGGTCGGCTGAGAAGGAGAAGCATGCTTGCGGCGTAGTTCATGAGATTTTGAGCCTGACACTTG
AGAAGCGCACGCTGGTGGATCATCTGACACACTTCCGGGAGGAATTCCG
Conservation Information
Conserved circRNAs NA
PMCS 0.315437429
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References this study