Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d038163_circ_g.7 |
ID in PlantcircBase | zma_circ_009111 |
Alias | zma_circ_0002376 |
Organism | Zea mays |
Position | chr6: 150031319-150031785 JBrowse» |
Reference genome | AGPv4.38 |
Type | u-circRNA |
Identification method | find_circ |
Parent gene | Zm00001d038163 |
Parent gene annotation |
pyruvate orthophosphate dikinase1 |
Parent gene strand | + |
Alternative splicing | Zm00001d038163_circ_g.6 Zm00001d038163_circ_g.8 Zm00001d038163_circ_g.9 Zm00001d038163_circ_g.10 Zm00001d038163_circ_g.11 Zm00001d038163_circ_g.12 Zm00001d038163_circ_g.13 Zm00001d038163_circ_g.14 Zm00001d038163_circ_g.15 Zm00001d038163_circ_g.16 Zm00001d038163_circ_g.17 Zm00001d038163_circ_g.18 Zm00001d038163_circ_g.19 Zm00001d038163_circ_g.20 Zm00001d038163_circ_g.21 Zm00001d038163_circ_g.22 Zm00001d038163_circ_g.23 Zm00001d038163_circ_g.24 Zm00001d038163_circ_g.25 Zm00001d038163_circ_g.26 Zm00001d038163_circ_g.27 Zm00001d038163_circ_g.28 Zm00001d038163_circ_g.29 Zm00001d038163_circ_g.30 Zm00001d038163_circ_g.31 Zm00001d038163_circ_g.32 Zm00001d038163_circ_g.33 Zm00001d038163_circ_g.34 Zm00001d038163_circ_g.35 Zm00001d038163_circ_g.36 |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Zm00001d038163_T027:2 Zm00001d038163_T031:2 Zm00001d038163_T010:2 Zm00001d038163_T033:2 Zm00001d038163_T022:2 Zm00001d038163_T016:1 Zm00001d038163_T011:2 Zm00001d038163_T024:2 Zm00001d038163_T029:2 Zm00001d038163_T032:2 Zm00001d038163_T034:2 Zm00001d038163_T002:2 Zm00001d038163_T026:2 Zm00001d038163_T012:2 Zm00001d038163_T035:2 Zm00001d038163_T023:2 Zm00001d038163_T019:1 Zm00001d038163_T001:2 Zm00001d038163_T018:2 Zm00001d038163_T020:2 Zm00001d038163_T009:2 Zm00001d038163_T004:2 Zm00001d038163_T017:2 Zm00001d038163_T021:2 Zm00001d038163_T013:2 Zm00001d038163_T005:2 Zm00001d038163_T030:2 Zm00001d038163_T008:2 Zm00001d038163_T015:2 Zm00001d038163_T025:2 Zm00001d038163_T003:2 Zm00001d038163_T006:2 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.208752989 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
150031448-150031432(+) 150031465-150031717(-) |
Potential amino acid sequence |
MVFGNMGNTSGTGVLFTRNPNTGEKKLYGEFLVNAQGEDVVAGIRTPEDLDAMKNLMPQAYDEL VENCNILESHYKEMQTPRSSWSWQCWLCSTRGRAPGPRSTGASTRSLASGAPP*(+) MLPNTMHCTFTAVPLRPVIWLMLLYFLALGLSHELNTASTASSSCFLGSAFPYSGSPGCCSSQQ ARRRPVA*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ma et al., 2021b |