Detail information of Os02g0702600_circ_g.4


General Information
CircRNA Name Os02g0702600_circ_g.4
ID in PlantcircBase osa_circ_016132
Alias NA
Organism Oryza sativa
Position chr2: 28954152-28958723  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method CIRCexplorer
Parent gene Os02g0702600
Parent gene annotation Rop nucleotide exchanger, PRONE domain containing protein. (Os02
t0702600-01);Rop nucleotide exchanger, PRONE domain containing p
rotein. (Os02t0702600-02);Similar to predicted protein. (Os02t07
02600-03)
Parent gene strand -
Alternative splicing Os02g0702600_circ_g.2 Os02g0702600_circ_g.3 Os02g0702600_circ_g.5
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-GC
Number of exons covered Os02t0702600-02:5
Os02t0702600-01:6
Os02t0702600-03:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTGTACCTTTTGCGGGCGTCCAAAGCGAAGAAATCAGCAGCCGGAGCTTAGTCCTCCGCCATGG
ATCTTCGGCGAAGGTAAGTGAGGAGGGGCTCGATCActtaggaagagcatccgtgacagctgga
ggaataggtatctgaagcaggacttcttcattgattgacatcgcagctttgaggatttgatgaa
ccagctta
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTAGGAAGAGCATCCGTGACAGCTGGAGGAATAGGTATCTGAAGCAGGACTTCTTCATTGATT
GACATCGCAGCTTTGAGGATTTGATGAACCAGCTTAGCCTGAAAAACAAGCCTATTTCTCTGAA
ATTGAGACAACCCTATATCTGGCACACGAGGTGATGGGAGCCACCACTTCTTCGTCTGCCTCAG
ACCATTCTTTTTGCCCCGGCCATTAGCTCGGCTACCACTCTCCACATACCAATACTCTGTGTCT
ACCATCGAGTCCAGCACTTCCTGCACATTTGTGGCATGCAGGATTAGGAGATACAAACTATGAC
ATTGCATAATTAAGTGAACGATGGTTTATGAACATTTTTTGATTTGTAAAATAAAATGAAAAGA
GATGGCAACTTTGTCAGATATGCATGTTCATTTACTAGAGTGTAACATAATAATAACAAAAACA
TACAATTAGCATGGAATCAAGCTTCTGAAGGGCAGGAAGGTTCACATTAACATCTGAACGTGCT
TTCGGGGTCATAATCTGCAGTAAAAGAAACATTAGACACAGCACTTAGTGAAATTACAGGCTTT
ATTCAATGGATCTTTACCTCAAACGTGCACCCGTCTGCTCCATTTTGTTTTGTAGGAACCAGCT
CAACCATGTAGGTTGTAGGAGAAAGCAACCAGTCCATTTCCTTCCGCCACCTGACTTTTTTCTC
TTCACAGAGTGGTTCCAGCTTCCAGAGTTCTCCAAATATAGTGGCTGGCATAAGAAATGATCAT
TTTGGTCATGATGATAGGAGTATGGAACAAATACTTCAAAAAAAGAAAGGAAAGAAAGATGATA
GTTCACCCAAAAAAATTCTACAATGGACAATATCATAGTTTCCAAACAAATGGTTAAGCATACC
TGAGAGATTAATAATGGCATTGGACAAAGCCAGAGCAGCACAAACACCTCTAGCTCCTCCTGAA
GCATCATCACCAAGCAGTAGCTTCCCAAACTTCTCCTTCATGGTTTCAATGTCTGAAGCACTCA
AGGTATACGTGATTGGCTTCTTCCCTTTGAGAGGAAGTAGATGGACAGCACTGAGTGTATCCAA
CTCGTAAAGTGAATGCTCCTCTTGCTTTCTCAGTGGATGGCATTGTGAAGAGAACGAAGAGCTA
GAAACATCTTTACTTGAGGAGCAACTTGAGACTTCATCATCAACGGAATCAGTGGTTACACACC
CATCTGCTCCCGTTGTTGCACTAAGGCCACTATCATCGTCATAAGAGGAACTGTTGATAATACA
GCTCTCAAGGCCATTGTACGTCATCACCCCTACATCATTTGGTATTTTCAACTTATTTTGGCAA
GATTTTAAATCATTCAGATGACCATGCGACATAAATTTAAGAATTTCCAGGGAGCCTGATCTTG
CGATAATGAAAACGGTGAATAAAATTAGTTATACCGCCATATTACATTTAAAATGCACAGACAT
GGAGATCAGGGTTTGGTTCAGTATACTCTAATGTGCTGATTCAGAAATACATTTTAACACAAAT
ATTTCCCAACGACCCAATGATTCTTTTGAAGAGCACTTCACAAATAACTCAAGAAAAGTCTAGC
AATTATGCACTGTACACCGTAATACACTCAAGATATTGAGAAAAAAAATGCCTTTAGCATGACA
GTACGAGTATGCCATTGCAAATGTTCTGATGTTTTGCCAACTCCATGTGCTTCTGTCTACAGAT
AGTACAGTGTGCCATCTGTAACGCTTAATGCCTCACTCCACCGCAATGTACAAGCTGATAATTC
ATTCCGCTTCCATACAAACTACGCTAGTTCAAGCTTGCTACCACTAAAAACCTAGCTCGGATAA
GCACAGGTAGGCACACATTAAACCAGGCTAGGTTCTTGTGACACCACAGAACCCACAAACAGAC
ACTCCCATTGAAAGCCGATAGCTTCAAAACATTCTAAGTGGTCCCTTTTACTGCTAACCACCAC
TGAGATTCCCAGATTCCCCTGTAAGACAAAGAAAAAAGGTTCTTTATCTACCCTACAGAAAAAA
ACTATGTTACACTTTCACGAGATGCTCACATGGCGCACACGATTTATAGTTCTAAATTGTAGTT
AGTCGTTAAGTCATACTCCCTACTCCTCCCCAACTTCCTGCCTGCTCACATTGCTCAGTGCTCA
CCGTCTAAAAAGCAGGGTACCACTACGTTACTTCTTTATCCTCCAAAGTCAATGAAGCCGCAGA
TGTCGCACTTGACCCAGCTGAAAGTAGCTAGCTGGTCCCCGACACACGCCGCTCCAAAAATAAA
AGGTACTAGTACTAGTTTCTACTGCTTGTAGTCTTGTACTCCTGCACTACCACTCCATGAACAA
ACACACCAGAAGCTAACGGATACAAGAGAGAGATCAAAAACGCAAACAAAAGAGTATAAAAATA
TCACTAGGCTGGTAAAAGTCAAGACTAGTGTAGACCGGAAGCAGTTGGATAGTGGCGAGGCGTG
AATGCGGCCGGCGCCGCCCGGATTCGCGTCAGATCAAGATAGCAGAGGCCATGACTCGCTTGCT
CTCTCTTGTTTGCTTTTTTTTACTCGTAGAGTTGCCGCATCTTTCGTGACTCCCATTTACTCCC
ACGTTCCTAACGTCAGTGGCTGATGGCACTGTGCTGCAGCCTCCGTCGGAGACCAAGCACATAG
CAGGGAGGAGAGGAGAGGAGAGGAGAGGAGAGGAGAGGAGGGCCCGTGAGGCATGAACAGTCGC
GTTGGTCGTGACTGCTCAGTGCCAAATCTACTGCTGCTGACACCAGCGCTATCCCACACTCCAT
GACCCTATCACGTTCACATCTAGTACTAGAAGAAAATATATCTCTGAAAATTTTTGTTTCATCA
CACTACTAGTGCTCCTACTTCTTTGCTGTATGGATTTTGGTTGTGCGGGTAAAAAAATTGTGAA
GAAAAGTTAGGCAGCTCCAAATCTTGGCCAGATTTGGAGCAGCAGGTTGCCCGGGGCTTGTAGA
CATGCTGCAGCTACCATCGATCCAACAACTAACAACTACTACAGCTAGTAGTACTTACAACCAA
CTCATGCACTTGAGAAATGAGGACCGAAATGAGCAAATACACCGTGAAATGAGACAATGCGGCA
GCTGTACGCACATGAACCGGGCAAGAACACCACGAACAGAAAAAGAAATGTAAAAAAAAAATGA
GGCAGGAAAACAAAAACGGGGGAGATTCGAGATTTCAGGCTTACTGTCAGGCTCCTGGTCCATG
TCGATGCTGAAGTCCTGCGGCCGCCGCCGGCAGCACGCCAGCGTCTTCATCCTCATTCCCCTCC
TCGGCAGCCGGTACCGGCAGTAGCAGCAGTAACTGAAAAAGAGAACCCCACAGCGTCACGATCT
GAAACGAGCAAGTTACGACGCTGGCCACCGCATCCCTTGCAATGAATCCCGTGCAGCCAAAGCT
CAAGGATAGCGCTCGTACAACTACGGCGGCGACTGGACACGAGCGCGCGCGGCGAGAAGAAAGA
TGAGACGCCGAAACGGCCAAAAACCCCCCAAATCTTTCTTCCCCAGTTGGTCCCGGTGAAGAAA
AAAAAAGAGAAAAGGTGCGCGACACGAACGACGCCACCAGTCCACCGCTACACACGGCAAGCGA
GCAAAACGCAAAGCACAAAACACGCGACTTTTCAGGTTCCACCACCGCTAATAATTAGCCCATC
AAAAACCAAACCCCAAACGTAGCGAGAGGAGAAGCTAATAAAATCCACGAGCAGATGCGGGGTA
ATGATGCGTAATCCACGGGGACGGGTTTAGATTAGATTTGGGTCGGATCACGCTAACCGCTCCC
GTGTTGTCCTGACGGGATTTTTATGGTGCGGGATGAGCGTCCCACCTATACGGGTTTACGGCTG
CTGCCACTGCCCACTGGCCCGGACGCCCGGTGACGCTGACCGGTCAGGGCAGCGAGGCCGAGGA
GGGCCGCGCGGCCGTGCAGCGCAGCGTCCGGAGGGAGGATGAGGTGTTTGAACTTTGAATTTTG
AACTGGACGGCGGTGTGGGAGGTTGAGGAAAGGAACAGGACGGGGACGTAGGCTTTTTGTTGGC
CGCTTTCCCCAAAGGTACTAGCTAGCTAGGCAGGCAGCTGAAGTCATGGTCATGAAACAAACGG
AAAGCCATGACCTGATGAAGGGAAAGATTGGCGTAATAAAGTGGGCGGAGCTGAAAAGTTTGGG
GATTGTTCATGCTATCTTTTTTTTTCTCCCTTTCTTTTCTTTCCCGGCATCGCTGATGCTTCAC
CTGCACCTGCACCACCCTCGCGAGGACGCCGTTTACCAGCCTAGCGACAAAACTGGCAACAAAA
CTGGCTTCTCGTCTACTAGACCATTCGGTAGCTCGCTCACCGACATTGCAGGAAGAGGAAAATC
GCCTGGACTGAACAGTGACTCGTTGAGGCAGTAGAGCCAGAGGAAGATGAGAAGTGTTGTACCT
TTTGCGGGCGTCCAAAGCGAAGAAATCAGCAGCCGGAGCTTAGTCCTCCGCCATGGATCTTCGG
CGAAGGTAAGTGAGGAGGGGCTCGATCA
Conservation Information
Conserved circRNAs NA
PMCS 0.115577286
Functional Information
Coding potential Y
Potential coding position 28954212-28958659(-)
Potential amino acid sequence MKKSCFRYLFLQLSRMLFLSDRAPPHLPSPKIHGGGLSSGC*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017