Detail information of BGIOSGA033373_circ_g.1


General Information
CircRNA Name BGIOSGA033373_circ_g.1
ID in PlantcircBase osi_circ_008654
Alias Chr10:22905922_22907620(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr10: 20021195-20022893  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method CIRI2
Parent gene BGIOSGA033373
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA033373_circ_g.2
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-No
Splicing signals   CT-TA
Number of exons covered BGIOSGA033373-TA:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCTCTTAATAAAATAGAACGTGAGAAACACTTGATGGCAGCCTTTACATACTTTGACAAAGATG
GAAGTGGTTTTATCACAGTTGACAAGCTTCAAAAGGcacaaagcgggatatatgaaaaagtact
ggatggacgtattgattttaaatcaaaccggtggcccaggatatctgacagtgcaaaggatctt
ataaaaaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CACAAAGCGGGATATATGAAAAAGTACTGGATGGACGTATTGATTTTAAATCAAACCGGTGGCC
CAGGATATCTGACAGTGCAAAGGATCTTATAAAAAAGATGCTCTGCCCTTATCCATCAGAGCGT
TTGAAAGCCCATGAAGTGCTAAGTTAGTATATTTAATATTTCGTTCATTAGTATCACTTTTATT
CAATTTAGTACCTCGTAGAATAATTTTGGACCAATGTTTTTGTTATCCACGAAATTTCATAAGT
TCCGAAACTATAGTAAGATCTCAAGAGTAAACAAAGAGCAGTTTCTTACAGTTTTTCTATTATA
TGTTCAGAGCATCCATGGATATGTGATAATGGAGTGGCTACTGAACGAGCTCTGGATCCAAGTG
TACTTCCTCGTCTCAAGCAATTTTCTGCAATGAATAGGTTAAAGAAATTGTCTCTCCAGGTATA
TTTTTTTTTACCGTTTCATCTTGTCATAGAAAAGTCATTTATTTGTTTCCATTTTGTCATCATG
GTGAAGCATCATTAAGTGCTTTCACAATTTCCAGGGAAATCATTATTCTATTACTGCTGTCCTT
TAATACTAAATCTAACAGAAGTGTGAACCTTTTTAAATTCCAGAAGCATAGCTACTTCTACAAG
AATAAAAACAAAGCTACCTTGTGTACATCATGCCATCATGGCCAAATTGATTTGCTGCAGTTCA
GATTTTTCCTCGTAGGATCTTAAAAATTTGACAGCACTGAAATTGTTTTTAAATCTGACTCAGT
AATATTTTCTTCATTGGTGAATTGTTTATTGTTATCATATACGAAGATCTTTTGTCGGTATTGT
ACCTGTTCCAGCATTGCTTCCAAGTTGAGAGTTACAGACTTTTATGGTGCACCTAAATTTACTA
TTCTAAATTGACCCAGATATAATTTCATAAATTGCTATGATACAAAAGTAGGAGATGCTAGGAA
TCAGGATGAGATTAATTAAGGCATCAATTTTTACTTAAACTATTATGTCTATCTATTTCTCATA
TTTAAAAATATTACAGATTGCAGTAATCTATGTTTCTTACTTGCTGTTCATCCAGATTATTGCT
GAGCGTCTTTCAGAAGAGGAGATTGTTGGGTTAAGAGAAATGTTCAAGGCTATGGACACCAAAA
ACAGAAGTGTGGTTACATTTGGTGAGCTTAAGGGACTGAAAAGATACAGCTCAGTGTTCAAGGA
TACTGAAATTAACGACTTAATGGAAGCAGTAAGTGGTCACTGTTATTGCAAAATACGATGCAAA
ATGTACTGTAGCACACTTAAACCATATACATGGTATCTGTAGTATATAGACTGGATATTGTTTG
TCAACCTTTTGATCATGCTGCTTTTCAGAATTCTGTATTGTTTTGAATGTGTGTGAAAAGTCGG
GGCCAACACATTCATGTCAAAAGATTACTTAAACCATTGGTTTAGTTGAAATGGAGTATGTCAT
GCATCTGTGATGAAATACTGTCTTCATTGCAGAACTGTTTTATATATTTTAACCTTTTTGAGTA
CTACTTCAGGCTGATGACACCACCTCCACCATCAACTGGGAAGAGTTTATTGCTGCAGCAGTGT
CTCTTAATAAAATAGAACGTGAGAAACACTTGATGGCAGCCTTTACATACTTTGACAAAGATGG
AAGTGGTTTTATCACAGTTGACAAGCTTCAAAAGG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021