Detail information of AT2G31170_circ_g.3


General Information
CircRNA Name AT2G31170_circ_g.3
ID in PlantcircBase ath_circ_015842
Alias At_ciR597
Organism Arabidpsis thaliana
Position chr2: 13283552-13283833  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ, CIRI-full
Parent gene AT2G31170
Parent gene annotation SYCO ARATH
Parent gene strand -
Alternative splicing AT2G31170_circ_g.2 AT2G31170_circ_g.4
Support reads 5
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT2G31170.2:1
AT2G31170.3:1
AT2G31170.1:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AACCGAGATAAGCCGCGCTCATCGCACTGCACTCTATGTGCCAACCGGGCCTTCCTCTTCCCCA
CGGACTCTCCCAAAAGGGTTCCCCTTCTTTTGCAGCctgtctgatagtgaagaaattccccaag
gattttgacatcttctcggagtcaacagtaacaaaaccattatggatccaatagctaatgttgc
tgctatca
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 282
Transcript exons: 13283552-13283833
CTGTCTGATAGTGAAGAAATTCCCCAAGGATTTTGACATCTTCTCGGAGTCAACAGTAACAAAA
CCATTATGGATCCAATAGCTAATGTTGCTGCTATCACATGCAGCACAACTCTGAGCAATTTCAT
TTTCATGGTGAGGGAACACAAGATCCATTCCGCCACCATGTATGTCAAAACTATAACCGAGATA
AGCCGCGCTCATCGCACTGCACTCTATGTGCCAACCGGGCCTTCCTCTTCCCCACGGACTCTCC
CAAAAGGGTTCCCCTTCTTTTGCAGC

Genomic sequence CTGTCTGATAGTGAAGAAATTCCCCAAGGATTTTGACATCTTCTCGGAGTCAACAGTAACAAAA
CCATTATGGATCCAATAGCTAATGTTGCTGCTATCACATGCAGCACAACTCTGAGCAATTTCAT
TTTCATGGTGAGGGAACACAAGATCCATTCCGCCACCATGTATGTCAAAACTATAACCGAGATA
AGCCGCGCTCATCGCACTGCACTCTATGTGCCAACCGGGCCTTCCTCTTCCCCACGGACTCTCC
CAAAAGGGTTCCCCTTCTTTTGCAGC
Conservation Information
Conserved circRNAs NA
PMCS 0.715929934
Functional Information
Coding potential Y
Potential coding position 13283756-13283554(-)
Potential amino acid sequence MSAAYLGYSFDIHGGGMDLVFPHHENEIAQSCAACDSSNISYWIHNGFVTVDSEKMSKSLGNFF
TIRQAAKEGEPFWESPWGRGRPGWHIECSAMSAAYLGYSFDIHGGGMDLVFPHHENEIAQSCAA
CDSSNISYWIHNGFVTVDSEKMSKSLGNFFTIRQAAKEGEPFWESPWGRGRPGWHIECSAMSAA
YLGYSFDIHGGGMDLVFPHHENEIAQSCAACDSSNISYWIHNGFVTVDSEKMSKSLGNFFTIRQ
AAKEGEPFWESPWGRGRPGWHIECSAMSAAYLGYSFDIHGGGMDLVFPHHENEIAQSCAACDSS
NISYWIHNGFVTVDSEKMSKSLGNFFTIRQ(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015