Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT1G10820_circ_g.4 |
ID in PlantcircBase | ath_circ_001989 |
Alias | NA |
Organism | Arabidpsis thaliana |
Position | chr1: 3601713-3603055 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | CIRCexplorer, PcircRNA_finder |
Parent gene | AT1G10820 |
Parent gene annotation |
Protein of unknown function (DUF3755) |
Parent gene strand | - |
Alternative splicing | AT1G10820_circ_g.1 AT1G10820_circ_g.2 AT1G10820_circ_g.3 |
Support reads | 2 |
Tissues | whole_plant |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | AT1G10820.2:5 AT1G10820.1:5 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.118088192 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
3602433-3601715(-) |
Potential amino acid sequence |
MLSNVPQQNALYVLNNMCHSTRTPFEGLSDAVMDLLQQNAQAFSQISYNLSACKLQDNISLFHQ ARNNISAILTDMKEMPGIMSRMPALPVSINDDLASNLLSSTTQRKRRKREDNNAAKNISTRKVV DTSPELNMLSNVPQQNALYVLNNMCHSTRTPFEGLSDAVMDLLQQNAQAFSQISYNLSACKLQD NISLFHQARNNISAILTDMKEMPGIMSRMPALPVSINDDLASNLLSSTTQRKRRKREDNNAAKN ISTRKVVDTSPELNMLSNVPQQNALYVLNNMCHSTRTPFEGLSDAVMDLLQQNAQAFSQISYNL SACKLQDNISLFHQARNNISAILTDMKEMPGIMSRMPALPVSINDDLASNLLSSTTQRKRRKRE DNNAAKNISTRKVVDTSPELNMLSNVPQQNALYVLNNMCHSTRTPFEGLSDAVMDLLQQNAQAF SQISYNLSACKLQDNISLFHQARNNISAILTDMKEMPGIMSRMPALPVSINDDLASNLLSSTTQ (-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |