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circRNA ID
AT1G01550_circ_g.1
Alias
ath_circ_000078
Organism
Arabidpsis thaliana
Position
chr1: 201172-201327  JBrowse»
Reference genome
TAIR10.38
Type  
e-circRNA
Identification method
SMALT, Segemehl
Parent gene
Parent gene annotation
Protein BPS1, chloroplastic
Parent gene strand
+
Alternative splicing
NA
Splice junction sequence  
CCATGAACGCAGAAATCAAGAACATATTTTTGTCAGACGGGTTAACGGTTCTGAAAGAGCTAGA
GGCAGTTGCTTCAGgttcatcgcagaatctgatgtaccttacagtctcaaacgagcttccatgg
gcacaatcattcatggaagtgcagaaca
Support reads
3
Tissues
siliques and seeds
Exon boundary  
No-No
Splicing signals  
GT-AG
Sanger sequencing for BSS  
NA
PCR primers for BSS  
NA
Assembled circRNA sequence  
NA
Sanger sequencing for FL  
NA
PCR primers for FL  
NA
Genomic sequence
GTTCATCGCAGAATCTGATGTACCTTACAGTCTCAAACGAGCTTCCATGGGCACAATCATTCAT
GGAAGTGCAGAACACCATGAACGCAGAAATCAAGAACATATTTTTGTCAGACGGGTTAACGGTT
CTGAAAGAGCTAGAGGCAGTTGCTTCAG
Number of exons covered
AT1G01550.1:1
AT1G01550.2:1
Conserved circRNAs
NA
Coding potential
N
Potential coding position
NA
Potential amino acid sequence
NA
Sponge-miRNAs
NA
circRNA-miRNA-mRNA network
References
Lu et al., 2017

Copyright©2017-2021 Institute of Crop Sciences / Institute of Bioinformatics, Zhejiang University.
Any questions or suggestions, please contact the Fan's lab, bioinplant@zju.edu.cn
For submittion, please click here. Last modified at 2021-03-09.

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