Detailed infomation of each circRNA
General Information | |
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CircRNA Name | POPTR_0001s44440_circ_g.6 |
ID in PlantcircBase | pop_circ_000491 |
Alias | Chr01:44337251-44337573 |
Organism | Populus trichocarpa |
Position | chr1: 44860029-44860351 JBrowse» |
Reference genome | Populus trichocarpa genome v3.0 |
Type | e-circRNA |
Identification method | CIRCexplorer |
Parent gene | POPTR_0001s44440 |
Parent gene annotation | NA |
Parent gene strand | + |
Alternative splicing | POPTR_0001s44440_circ_g.1 POPTR_0001s44440_circ_g.2 POPTR_0001s44440_circ_g.3 POPTR_0001s44440_circ_g.4 POPTR_0001s44440_circ_g.5 POPTR_0001s44440_circ_g.7 POPTR_0001s44440_circ_g.8 |
Support reads | NA |
Tissues | stem xylem |
Exon boundary | No-No |
Splicing signals | AG-GA |
Number of exons covered | POPTR_0001s44440.3:1 POPTR_0001s44440.5:1 POPTR_0001s44440.1:1 POPTR_0001s44440.2:1 |
Conservation Information | |
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Conserved circRNAs | osa_circ_013233 |
PMCS | 0.834610526 |
Functional Information | |
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Coding potential | N |
Potential coding position |
NA |
Potential amino acid sequence |
NA |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Liu et al., 2021 |