Detail information of Os05g0566900_circ_g.5


General Information
CircRNA Name Os05g0566900_circ_g.5
ID in PlantcircBase osa_circ_028992
Alias NA
Organism Oryza sativa
Position chr5: 28222834-28225444  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os05g0566900
Parent gene annotation Similar to TA9 protein (Fragment). (Os05t0566900-01);Hypothetica
l conserved gene. (Os05t0566900-02)
Parent gene strand +
Alternative splicing Os05g0566900_circ_g.1 Os05g0566900_circ_g.2 Os05g0566900_circ_g.3 Os05g0566900_circ_g.4 Os05g0566900_circ_g.6 Os05g0566900_circ_g.7
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os05t0566900-01:5
Os05t0566900-02:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTCAAGTGCTGCATATGCAAACACTACACAGCCAAGTACAATGGAGTCCTCACAAGGAAACAAC
CAGGCGCACACTCTTTCCCATCTTTCAAACTTACTGgttaaagagattcctgagccaagatctc
gagcggcaagtaatgctgccagtcgaggtgtaagaggcggtgcagatcgaggcgggcgaaacag
ttcttttc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTTAAAGAGATTCCTGAGCCAAGATCTCGAGCGGCAAGTAATGCTGCCAGTCGAGGTGTAAGAG
GCGGTGCAGATCGAGGCGGGCGAAACAGTTCTTTTCACTCTAGCTCCATTGGTAATAGGAAAAA
CCACCATCAGTATCTTCAAGGTTATCATTGGTTGTAATTTCTTTTCACATTTTTTTTTTGTTCA
TTTCAATATTCAGACAATGTGGCTTCAAGGTCAATCTCAGGGCCTGGTATGACATCAACCAATT
CCACTCAGAAGCAAACAATTCCAAGGTAAGAGAGCTTCCCTTTTGTTGCATATATTTTAAGAAG
GGCTTGTACAGCAGGTCTGCCTTTTTAGAAGGCATACCATTTTTCTAGTTGTCTTTTCTCTGGA
GCCTTTATCTGTTTGCATTTGATATGATCCTTTTGCATTATTGTTAATTCTGCTGTTATGTGTA
AAATTTCATGCAAACAGCATAGGTTTTTTTACAAACAATTCTCTTGTTAGATGACTATGACTCA
ATAGTTCATATAGTTACATATAATTGTTATCTGAGACTATCGTTTGTAATGTTGTGTTAGATTC
AAATGAACCATATGGAATATGGATGAACTTGGATGATGCATCCCACATGAAAGTTAATGCATAC
TACAAATTTTATCTGATGCGTTGATGATTTCATAACGCCTTCTTATTTCACTCTGGGGAATTCA
TGCTCTTTTTTATCTGCTGTAGTTCCTTGGTAAACAAAAGTGTGGTTGCTGATGGACCGTCGGT
ACCTGCACAATCATCATCTGGGTTTCAGCACGGTTGGTCTGGGACACCAGGTCAGTTGTCAATG
GCCGATATTGTGAAAATGGGCAGGCCTCAGGTAAAGCAGTCCTCTAGCAAGCCTGCGGTTACTG
CAGACAAAGGATATACTGGACAATACCCATCTTTGCCCAGTACTGTAAACCAGAATTTGAAACA
ATCTGCTAGCACAGTTTCACCAACAAATCCTGACCAGGGGTTACATTCTGCTCAAGATTCTATT
CATCCCAAGGATCACAACCACTCAGCAGCTGTCAACAAGCAGGCATATGATAATGATTGGCTTC
CACAGGACGAGCCACCACCAGGAAATCAATCAGCCTTGCCTGAGACATCCGGTGACCAATCATT
ATATGAGTCATCGCTACAGTCATCTACACTGGTTGCTGGTGTGATTAACCCCCATGAAAATTCT
CATTTGGATGAGAACAGATCAGCTGCATTTTCTTCCGAGAGACACTTGGAACATCATGGAGGCG
ATTCTGAATATGATGATGGACTGTTGCAAGAATCGAGTACCTATCTGCCTCAGAAGAATTCTCA
TGCAGAAGATGAAGGTGAGTGTAGATATGAGTTTATGAATTTGCTTAACTTTAGCATCTCCATA
TTCTGTCCTGCTGGAATAACCTGGATCTTTGGTGTTATGAGCTTATTGCATTCGTTAGCATTGG
AAAAGGCAGCAGACAATTTATTAGTAAATACTTTTGGTATTCCTTCCAGAATGCCATTGATACT
TGCGTAGGTGTGAGATGCAACTTACACCCTGTAATTGACGTTATCAATTCCTATGTTAATCTGG
GTATGTTGAATGCATCTCTGTTATGATAGGGTTTAGGGAGGCAGTTGTTGCAACTGGCAAGTAA
TCAACTTTACTGAACAAAATTGATATATGATGGTTCCTGCATCTTTTTAGTAGTAGAATACCAG
TCTTCAGATTTCTGATGTCATGCTGTTACTTTCTTGATGAATAATGAACTTTAGACTGTCGTGT
TATCCAGTATTAAAAGTTCTGTAAGGCAACAACAGGTCATGCAGTTTATTGTGAATAGGTTTTA
CAGCATATGTTCCTTTCTGGTTGCTTGTTCTTTTCCTGGACGCTGTTGCATTCTGGCTTTGGCT
GTGCATGACCTGCATGTGAATACTGATTTCTTTTTACTATTCTTGCAGTTGAGGGCTCCAATTC
TGATGTAGCGTTAGCCACTGAAAACTTCCAGGGTCTAAGCCTACATAATGAAGAGTTAGTTCCA
ACAAAATTAGCTGAAGATAACCCTGCAGTTATAATTCCTGATCACCTGCAAGTTACCGGCTCAG
ACTGTGTCACTTTGAGCTTTGGCAGTTTTGAATCTGGAGCATTTTCTGGGCTTCTCCCTGTTCC
ATCAAGGAGCGCTGATGATAACAATGTGGAGTTGCCTGTTATAGAGGAATCTGTACCTCTAGAT
CAAATTGATTCAAGGTTAATTAAGTTTGTTCCTGCCGTCTTTATTTCACTCCACATATTGCTTG
TGACATGACTGGAATGCCATTTTTTTAATCTTGCAGAGATCAAGACTATTATGATAGTGCCGCA
GTTAATTCGTCAGGAAATGAGAACCTTGATACTATCATAGGAACTAACATGGAGAACATTGATG
TACCTTCTGTTTCACAGCCTGATGTCCTGAGACAGGAAGTGCTTGATCATTCCGGTCTTCAATA
TAACCTACCATCTGATTCAAGTGCTGCATATGCAAACACTACACAGCCAAGTACAATGGAGTCC
TCACAAGGAAACAACCAGGCGCACACTCTTTCCCATCTTTCAAACTTACTG
Conservation Information
Conserved circRNAs NA
PMCS 0.233160769
Functional Information
Coding potential Y
Potential coding position 28223075-28225441(+)
28225360-28222891(+)
Potential amino acid sequence MTSTNSTQKQTIPSSLVNKSVVADGPSVPAQSSSGFQHGWSGTPGQLSMADIVKMGRPQVKQSS
SKPAVTADKGYTGQYPSLPSTVNQNLKQSASTVSPTNPDQGLHSAQDSIHPKDHNHSAAVNKQA
YDNDWLPQDEPPPGNQSALPETSGDQSLYESSLQSSTLVAGVINPHENSHLDENRSAAFSSERH
LEHHGGDSEYDDGLLQESSTYLPQKNSHAEDEVEGSNSDVALATENFQGLSLHNEELVPTKLAE
DNPAVIIPDHLQVTGSDCVTLSFGSFESGAFSGLLPVPSRSADDNNVELPVIEESVPLDQIDSR
DQDYYDSAAVNSSGNENLDTIIGTNMENIDVPSVSQPDVLRQEVLDHSGLQYNLPSDSSAAYAN
TTQPSTMESSQGNNQAHTLSHLSNLLVKEIPEPRSRAASNAASRGVRGGADRGGRNSSFHSSSI
DNVASRSISGPGMTSTNSTQKQTIPSSLVNKSVVADGPSVPAQSSSGFQHGWSGTPGQLSMADI
VKMGRPQVKQSSSKPAVTADKGYTGQYPSLPSTVNQNLKQSASTVSPTNPDQGLHSAQDSIHPK
DHNHSAAVNKQAYDNDWLPQDEPPPGNQSALPETSGDQSLYESSLQSSTLVAGVINPHENSHLD
ENRSAAFSSERHLEHHGGDSEYDDGLLQESSTYLPQKNSHAEDEVEGSNSDVALATENFQGLSL
HNEELVPTKLAEDNPAVIIPDHLQVTGSDCVTLSFGSFESGAFSGLLPVPSRSADDNNVELPVI
EESVPLDQIDSRDQDYYDSAAVNSSGNENLDTIIGTNMENIDVPSVSQPDVLRQEVLDHSGLQY
NLPSDSSAAYANTTQPSTMESSQGNNQAHTLSHLSNLLVKEIPEPRSRAASNAASRGVRGGADR
GGRNSSFHSSSIDNVASRSISGPGMTSTNSTQKQTIPSSLVNKSVVADGPSVPAQSSSGFQHGW
SGTPGQLSMADIVKMGRPQVKQSSSKPAVTADKGYTGQYPSLPSTVNQNLKQSASTVSPTNPDQ
GLHSAQDSIHPKDHNHSAAVNKQAYDNDWLPQDEPPPGNQSALPETSGDQSLYESSLQSSTLVA
GVINPHENSHLDENRSAAFSSERHLEHHGGDSEYDDGLLQESSTYLPQKNSHAEDEVEGSNSDV
ALATENFQGLSLHNEELVPTKLAEDNPAVIIPDHLQVTGSDCVTLSFGSFESGAFSGLLPVPSR
SADDNNVELPVIEESVPLDQIDSRDQDYYDSAAVNSSGNENLDTIIGTNMENIDVPSVSQPDVL
RQEVLDHSGLQYNLPSDSSAAYANTTQPSTMESSQGNNQAHTLSHLSNLLVKEIPEPRSRAASN
AASRGVRGGADRGGRNSSFHSSSIDNVASRSISGPGMTSTNSTQKQTIPSSLVNKSVVADGPSV
PAQSSSGFQHGWSGTPGQLSMADIVKMGRPQVKQSSSKPAVTADKGYTGQYPSLPSTVNQNLKQ
SASTVSPTNPDQGLHSAQDSIHPKDHNHSAAVNKQAYDNDWLPQDEPPPGNQSALPETSGDQSL
YESSLQSSTLVAGVINPHENSHLDENRSAAFSSERHLEHHGGDSEYDDGLLQESSTYLPQKNSH
AEDEVEGSNSDVALATENFQGLSLHNEELVPTKLAEDNPAVIIPDHLQVTGSDCVTLSFGSFES
GAFSGLLPVPSRSADDNNVELPVIEESVPLDQIDSRDQDYYDSAAVNSSGNENLDTIIGTNMEN
IDVPSVSQPDVLRQEVLDHSGLQYNLPSDSSAAYANTTQPSTMESSQGNNQAHTLSHLSNLL(+
)
MQTLHSQVQWSPHKETTRRTLFPIFQTYWLKRFLSQDLERQVMLPVEV*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017