Plant Circular RNA Database

Detail information of 2_circ_ag.20

			
						 General Information
					
						CircRNA Name
						2_circ_ag.20
					
						ID in PlantcircBase
						ath_circ_014289
					
						Alias
						2:9266203-9270356
					
						Organism
						
							Arabidpsis thaliana						
					
						Position
						
							chr2: 9266203-9270356  JBrowse»						
					
						Reference genome
						
							TAIR10.38						
					
						Type  
						
							ag-circRNA							
									
						Identification method
						find_circ; CIRI2
					
						Parent gene
						
							NA						
					
						Parent gene annotation
						
							NA							
					
						Parent gene strand
						NA
					
						Alternative splicing
						
							AT2G21660_circ_g.19 						
					
						Support reads
						2/1/2
					
						Tissues
						root;leaf;flower
					
						Exon boundary  
						
							NA-NA							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						NA

General Information
CircRNA Name	2_circ_ag.20
ID in PlantcircBase	ath_circ_014289
Alias	2:9266203-9270356
Organism	Arabidpsis thaliana
Position	chr2: 9266203-9270356 JBrowse»
Reference genome	TAIR10.38
Type	ag-circRNA
Identification method	find_circ; CIRI2
Parent gene	NA
Parent gene annotation	NA
Parent gene strand	NA
Alternative splicing	AT2G21660_circ_g.19
Support reads	2/1/2
Tissues	root;leaf;flower
Exon boundary	NA-NA "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	NA

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							CCACGTCCATAATCATAATGGCATCTGTCATAGATTTTTCCTCCTCGAAAGTAACAAATCCGAA
TCTTCTTGACTTTCCAGTGTCACGATCGTAAATGATcttggaatcaataacgtcgccgtattga
gcgaaggcagtctcaagagctctgtcatcagtggcccatgctagacctccaacgaagcaccgat
actcaaca

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							CTTGGAATCAATAACGTCGCCGTATTGAGCGAAGGCAGTCTCAAGAGCTCTGTCATCAGTGGCC
CATGCTAGACCTCCAACGAAGCACCGATACTCAACATCACCGGACGCCATTGAAATTTGAAAAG
AAGATCTAAGGGATTACAGTGAGAGTAGTGAGCAGTGAGATGTGTAGAACGATGTAGACGAAGT
CTCGTTATTTATAAGGGGGCTGAGATATTAACCAAGGTTTAGATATTTTCTAGGTTTAGAGTCG
GTTTACGTGAATTCTGGTTTAACCATGGTTAAATCTGTAGTTAAAATTCGTAGTGGTTGGGGAC
ATATCACGTGACACTTTTTGGTTTAATGCGCAAATGGAAAGACGACGATGCGAGAAAAGATATT
TTATCTTGGGACAAAGAAAAATATCTCAGTGGAGCAAAAAAATATCTCATATGTCAAATGACAT
CTTTATCCCTTAGTTTGAAATTTGAAATAACGTGGTGATACACAACTGATACTGGGCCGGATCA
ATTCGGCTAGTCCCTATTTTAGTCGCGATAGTAGTCTAGTATAATTGGGCCTGAACCATTGAGG
CAGAAAAATATTAATTTGAGAAAAAGAGAATGTTGACAGTGGGATTTGAACCCACGCCCTTTCG
GACCAGAACCTTAATCTGGCGCCTTAGACCAACTCGGCCATATCAACTTTGTTGCTACTTAGTT
GCATGCATGTAATTTGAATATAAAACTACTCTCTGTGATTTCAAAAGCTACATTTTTTTTTTGT
CGATAAACACTCCATTAAAACCCGTTCCAGGCATACAAACTCACTTCCAAGAGGAGCTGAACAA
AGACCAGTAGGTTTACAAAGGATGAAATAAAGCCAAAGGTGTTGTTTACAAAGCACACAACAAC
CAAGCCAATAAGCAGTACAAGAACATAATTTGGTAAATAACTTAATACAAGGGATTTAAAAAAC
CTAAAGATAATAAGCATTACACACTGTAAAGCCATCTAATGTATCTTTAGTTAGCCATGTTTGA
AGGCATTGTACAGTTTAACATGGTCTCAAGTTCTTCATGTTCCCTTTTAGATATAGTAATCAGA
GTCAGATATTGAAAATGTAAGACTCAAAACAGAACACAAGAAACAGAGGATATATGAAGAATAA
GAAGAACACATGCGTCTTTAGTTAGCTAGGGTTTTTTGTGAAGTTCTTTCCGTTTGCTTTTCGA
TATAGTTTCCGAAGAAAACAAAACATATGCAAATTTAAAGTGAATTTATGTTACCAATTACGTA
ATTTACTTTTCACTTTTTTGTAAAAAAGTAAAAATGAAGTAAGTGAAGAAAAACACAGTAAAGA
AGGTAAATGATTTATGTATAAAAAATGCTTCTTTCTTCTACAAATTATTAATTTTTTAATTAAA
ATGATGAAACATTTTCTAAATTATATAAATATACACAACGGCTTCTTTTCACACATAAATTTCT
TTTTAAAAAATCTTGACTTAGACTTTCCGTTAATTCGCTACCAACTCACACGGTGATGGTTTTA
ATCTCTGAAACTTCCGACGACGGCTCTACTGGCGGCGATCATCAAATCAAGAAACCTAAAAAAG
AAGAGGATCGAAACAAGAAATTGAAAGAAAAGGTTCAGGTGTCGCTACCAATTCCAGAAGAACT
CATCTTACGTTGCTTCCTACTCGTTCGGAGATGTCACCACCCGTCGCTTTCCCTCGTCTGCAGA
TCCTTCCATAGTCTCATGTCGAAGCTCTACGATGATCGCTTGCGTCTCGGCTACACCGAAAACG
TTCTTTACGCCTACGTTGGATTCCCTCCTGTTGAAAACCCTAGCTGGTACATTCTCCATCGTAA
ACCCTATCGAAACTTGCCTAACACGATTTCGTTGAAATTGTGCAAAATCGATTCCCTCCCTCCC
ATGCCTTGGGGATCTACTGTCGTCACTATCGGATCGGATATCTATGTCATTGGTGGACGCGTCG
GCGAGAAACTTTTAGAAGATGTAGGCGTAGGCTATAATAAACCCATAAGCGGTGGACGCCGCGG
CGAGACATCCATAAGAGGTGGACACGCAGGCGAACGACGCATCTCGGATGTGACTCACATAAAC
TGCAGATTTCACGAGTATCGCTCCCTCCCGAGTATGAAGATGGCTCGCTGTCGCGCAGCCGCGG
GTGTAATTGACGGAAAGATTTATGTGATCGGAGGTCGTAAGGTACGAACATCTGATTGGGTTGA
AGTGTTCGATTTAAAGAAACAGAGTTGGAGTTCTGTGCCAGGTCCGTACCCTGAAGCGTTTGGA
AGAGGAGAGTTTCTGACATATGCGGTGATGAAGGAGAAGATTTACTGTTTGGATCTTACTCGCA
ATATTCATATTTATGATCCTAAGGAAAGTAAATGGGAGTCTTGGACTCATGGACCGTTGAGTGC
TTCTTGGAATGATTCGTCTTGTGTGGTTGATAATTTGCTGTTTTGCATCAATACATCAGTGTAT
TTCCTTGGATGGCCAATAAAAATATATGATCCAGAGAAGAAGACTTGGTTTTACTTGCAAGGTT
TACAAGGTTTTCCAGCTAATGGTCTCTTTGTGGATGGATATAAAATGGCTAATTTTGGCGGGAA
GTTGGTGATTTTGAGCGCTGATGTGCACCGGCTTAGGCGGTATGACTGTAGGAAAAGAGAGATT
TGGTGCATAGAGATTGCTTGGGAAAGAAAGGAAGATGGTACATTTTGGGGGAAGGTCGAATCAG
TGGCGGTTGTGCTTACACCAGCAAAGACGACTTCTGTTGACATTTGTGGAACTGTTACGGTTTG
ATATGATACATATGGGATGGTTTCATGCAGGGTATGCTTCTTTAAGTACTGTTGTTGATGAATT
CAGATGTTTATAAATTGTCTCTAGTTTCAAGACTTAGTTAGGTTTTAATGAAACTTGCAGGTGA
AGGATATATATTACATCTACTAAGATCAAGCAGAGTGGCTAAGAAGAAGCTGTTATCTGAAGCC
TCAAGAGTAACCTTTTTGCACAATGTGAATTGATAATAAAATACTCTTATAGAATTAGTCTTCT
GTACAACTCTTAAGCTGTAAAAAAGGTTAGGCCATTGTTTTTGACCTTAATGAAATGTTCTTAC
TAAATTTGTTGAAATGTATCTTTAGCTAGCCATATTTAACTTGGTCTCAAGTTATTTCTGTCTG
CTTTTAGATATATAATTCCTCCGCAAGTAACCACAAATATTGAAAGCGCAAGACTTAAAACAGA
ACACAAGAAACAGAGGATATATGAAGAAAAAAGAAGAACACATGCGTAATTTAGTTAAGCATGT
GTTCAATAATCTTCAGGGGTTGAGAAGTTGTTTTTTTCTGTTAATCTTGATGACTCAAAGGTAT
ATAGTTCAATAATCGTGTATGATCAAAAGGACAAGTATTGGAAACTCTTGAGGGTTTACAAGGT
TTCCGGCGAACATCCAGTTAGTGGTTTTTGGACAGTGAATTTTAAGCGTTGTCGAACTGTTACT
CTTTGCAGAATTCAGGTATGCTTCAGTGATGAGTATGCTTTTAGTAAAAGTACTTTTGATGATG
AAGATTTCAGATTTTCAGACATTTAAACAAAATAAAATTAGCTTTCATAGAAAAGTATCTTTAG
AATTAGACATGTTGAAGAGGAATTAAACAGTTTACTTACAGTAACAAGGTGTCACGTTCTTTCT
GTTTACTTTTGAATATGTAATTCAAGTAATTATTGCAAGTGTAAGAAAGATTAACCAAAGAAAT
CTGAATCAAGCAAAACATTGCGGATCTTGCAATCGATAATGTCCACAAATCCAGAGAATAACCC
TCTCAAGATCATTTTCATAACATTACCGATAGCGATTACATAACATTTTATTATTCTCATATTA
AAACCTCTTATAATCCAGCCATCTTCTTCTGCTTTTCGTTTATCAACCTAACTAACTCTAGTGC
AAATTCAGCAGACCTGTTTTTGCGCCGTTGCCTAGCTACTTCCACAGTGATGGATCCAACATTA
ACACATTTACTTCGAGACTCTTCCACGTCCATAATCATAATGGCATCTGTCATAGATTTTTCCT
CCTCGAAAGTAACAAATCCGAATCTTCTTGACTTTCCAGTGTCACGATCGTAAATGAT
						
					

			
		

Sequences
Splice junction sequence	CCACGTCCATAATCATAATGGCATCTGTCATAGATTTTTCCTCCTCGAAAGTAACAAATCCGAA TCTTCTTGACTTTCCAGTGTCACGATCGTAAATGATcttggaatcaataacgtcgccgtattga gcgaaggcagtctcaagagctctgtcatcagtggcccatgctagacctccaacgaagcaccgat actcaaca
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	CTTGGAATCAATAACGTCGCCGTATTGAGCGAAGGCAGTCTCAAGAGCTCTGTCATCAGTGGCC CATGCTAGACCTCCAACGAAGCACCGATACTCAACATCACCGGACGCCATTGAAATTTGAAAAG AAGATCTAAGGGATTACAGTGAGAGTAGTGAGCAGTGAGATGTGTAGAACGATGTAGACGAAGT CTCGTTATTTATAAGGGGGCTGAGATATTAACCAAGGTTTAGATATTTTCTAGGTTTAGAGTCG GTTTACGTGAATTCTGGTTTAACCATGGTTAAATCTGTAGTTAAAATTCGTAGTGGTTGGGGAC ATATCACGTGACACTTTTTGGTTTAATGCGCAAATGGAAAGACGACGATGCGAGAAAAGATATT TTATCTTGGGACAAAGAAAAATATCTCAGTGGAGCAAAAAAATATCTCATATGTCAAATGACAT CTTTATCCCTTAGTTTGAAATTTGAAATAACGTGGTGATACACAACTGATACTGGGCCGGATCA ATTCGGCTAGTCCCTATTTTAGTCGCGATAGTAGTCTAGTATAATTGGGCCTGAACCATTGAGG CAGAAAAATATTAATTTGAGAAAAAGAGAATGTTGACAGTGGGATTTGAACCCACGCCCTTTCG GACCAGAACCTTAATCTGGCGCCTTAGACCAACTCGGCCATATCAACTTTGTTGCTACTTAGTT GCATGCATGTAATTTGAATATAAAACTACTCTCTGTGATTTCAAAAGCTACATTTTTTTTTTGT CGATAAACACTCCATTAAAACCCGTTCCAGGCATACAAACTCACTTCCAAGAGGAGCTGAACAA AGACCAGTAGGTTTACAAAGGATGAAATAAAGCCAAAGGTGTTGTTTACAAAGCACACAACAAC CAAGCCAATAAGCAGTACAAGAACATAATTTGGTAAATAACTTAATACAAGGGATTTAAAAAAC CTAAAGATAATAAGCATTACACACTGTAAAGCCATCTAATGTATCTTTAGTTAGCCATGTTTGA AGGCATTGTACAGTTTAACATGGTCTCAAGTTCTTCATGTTCCCTTTTAGATATAGTAATCAGA GTCAGATATTGAAAATGTAAGACTCAAAACAGAACACAAGAAACAGAGGATATATGAAGAATAA GAAGAACACATGCGTCTTTAGTTAGCTAGGGTTTTTTGTGAAGTTCTTTCCGTTTGCTTTTCGA TATAGTTTCCGAAGAAAACAAAACATATGCAAATTTAAAGTGAATTTATGTTACCAATTACGTA ATTTACTTTTCACTTTTTTGTAAAAAAGTAAAAATGAAGTAAGTGAAGAAAAACACAGTAAAGA AGGTAAATGATTTATGTATAAAAAATGCTTCTTTCTTCTACAAATTATTAATTTTTTAATTAAA ATGATGAAACATTTTCTAAATTATATAAATATACACAACGGCTTCTTTTCACACATAAATTTCT TTTTAAAAAATCTTGACTTAGACTTTCCGTTAATTCGCTACCAACTCACACGGTGATGGTTTTA ATCTCTGAAACTTCCGACGACGGCTCTACTGGCGGCGATCATCAAATCAAGAAACCTAAAAAAG AAGAGGATCGAAACAAGAAATTGAAAGAAAAGGTTCAGGTGTCGCTACCAATTCCAGAAGAACT CATCTTACGTTGCTTCCTACTCGTTCGGAGATGTCACCACCCGTCGCTTTCCCTCGTCTGCAGA TCCTTCCATAGTCTCATGTCGAAGCTCTACGATGATCGCTTGCGTCTCGGCTACACCGAAAACG TTCTTTACGCCTACGTTGGATTCCCTCCTGTTGAAAACCCTAGCTGGTACATTCTCCATCGTAA ACCCTATCGAAACTTGCCTAACACGATTTCGTTGAAATTGTGCAAAATCGATTCCCTCCCTCCC ATGCCTTGGGGATCTACTGTCGTCACTATCGGATCGGATATCTATGTCATTGGTGGACGCGTCG GCGAGAAACTTTTAGAAGATGTAGGCGTAGGCTATAATAAACCCATAAGCGGTGGACGCCGCGG CGAGACATCCATAAGAGGTGGACACGCAGGCGAACGACGCATCTCGGATGTGACTCACATAAAC TGCAGATTTCACGAGTATCGCTCCCTCCCGAGTATGAAGATGGCTCGCTGTCGCGCAGCCGCGG GTGTAATTGACGGAAAGATTTATGTGATCGGAGGTCGTAAGGTACGAACATCTGATTGGGTTGA AGTGTTCGATTTAAAGAAACAGAGTTGGAGTTCTGTGCCAGGTCCGTACCCTGAAGCGTTTGGA AGAGGAGAGTTTCTGACATATGCGGTGATGAAGGAGAAGATTTACTGTTTGGATCTTACTCGCA ATATTCATATTTATGATCCTAAGGAAAGTAAATGGGAGTCTTGGACTCATGGACCGTTGAGTGC TTCTTGGAATGATTCGTCTTGTGTGGTTGATAATTTGCTGTTTTGCATCAATACATCAGTGTAT TTCCTTGGATGGCCAATAAAAATATATGATCCAGAGAAGAAGACTTGGTTTTACTTGCAAGGTT TACAAGGTTTTCCAGCTAATGGTCTCTTTGTGGATGGATATAAAATGGCTAATTTTGGCGGGAA GTTGGTGATTTTGAGCGCTGATGTGCACCGGCTTAGGCGGTATGACTGTAGGAAAAGAGAGATT TGGTGCATAGAGATTGCTTGGGAAAGAAAGGAAGATGGTACATTTTGGGGGAAGGTCGAATCAG TGGCGGTTGTGCTTACACCAGCAAAGACGACTTCTGTTGACATTTGTGGAACTGTTACGGTTTG ATATGATACATATGGGATGGTTTCATGCAGGGTATGCTTCTTTAAGTACTGTTGTTGATGAATT CAGATGTTTATAAATTGTCTCTAGTTTCAAGACTTAGTTAGGTTTTAATGAAACTTGCAGGTGA AGGATATATATTACATCTACTAAGATCAAGCAGAGTGGCTAAGAAGAAGCTGTTATCTGAAGCC TCAAGAGTAACCTTTTTGCACAATGTGAATTGATAATAAAATACTCTTATAGAATTAGTCTTCT GTACAACTCTTAAGCTGTAAAAAAGGTTAGGCCATTGTTTTTGACCTTAATGAAATGTTCTTAC TAAATTTGTTGAAATGTATCTTTAGCTAGCCATATTTAACTTGGTCTCAAGTTATTTCTGTCTG CTTTTAGATATATAATTCCTCCGCAAGTAACCACAAATATTGAAAGCGCAAGACTTAAAACAGA ACACAAGAAACAGAGGATATATGAAGAAAAAAGAAGAACACATGCGTAATTTAGTTAAGCATGT GTTCAATAATCTTCAGGGGTTGAGAAGTTGTTTTTTTCTGTTAATCTTGATGACTCAAAGGTAT ATAGTTCAATAATCGTGTATGATCAAAAGGACAAGTATTGGAAACTCTTGAGGGTTTACAAGGT TTCCGGCGAACATCCAGTTAGTGGTTTTTGGACAGTGAATTTTAAGCGTTGTCGAACTGTTACT CTTTGCAGAATTCAGGTATGCTTCAGTGATGAGTATGCTTTTAGTAAAAGTACTTTTGATGATG AAGATTTCAGATTTTCAGACATTTAAACAAAATAAAATTAGCTTTCATAGAAAAGTATCTTTAG AATTAGACATGTTGAAGAGGAATTAAACAGTTTACTTACAGTAACAAGGTGTCACGTTCTTTCT GTTTACTTTTGAATATGTAATTCAAGTAATTATTGCAAGTGTAAGAAAGATTAACCAAAGAAAT CTGAATCAAGCAAAACATTGCGGATCTTGCAATCGATAATGTCCACAAATCCAGAGAATAACCC TCTCAAGATCATTTTCATAACATTACCGATAGCGATTACATAACATTTTATTATTCTCATATTA AAACCTCTTATAATCCAGCCATCTTCTTCTGCTTTTCGTTTATCAACCTAACTAACTCTAGTGC AAATTCAGCAGACCTGTTTTTGCGCCGTTGCCTAGCTACTTCCACAGTGATGGATCCAACATTA ACACATTTACTTCGAGACTCTTCCACGTCCATAATCATAATGGCATCTGTCATAGATTTTTCCT CCTCGAAAGTAACAAATCCGAATCTTCTTGACTTTCCAGTGTCACGATCGTAAATGAT

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.917293892

Conservation Information
Conserved circRNAs	NA
PMCS	0.917293892

			
						 Functional Information
					
						Coding potential
						NA
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							ath-miR415 						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	NA
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	ath-miR415
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Philips et al., 2020

circRNA

Detail information of 2_circ_ag.20

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