Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d021469_circ_g.2 |
ID in PlantcircBase | zma_circ_009410 |
Alias | zma_circ_0002595 |
Organism | Zea mays |
Position | chr7: 153019270-153020352 JBrowse» |
Reference genome | AGPv4.38 |
Type | u-circRNA |
Identification method | find_circ |
Parent gene | Zm00001d021469 |
Parent gene annotation |
Glutathione S-transferase F9 |
Parent gene strand | - |
Alternative splicing | Zm00001d021469_circ_g.1 |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Zm00001d021469_T005:2 Zm00001d021469_T006:2 Zm00001d021469_T001:2 Zm00001d021469_T010:2 Zm00001d021469_T008:2 Zm00001d021469_T002:2 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.377152491 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
153020260-153019331(+) 153020262-153019272(-) |
Potential amino acid sequence |
MSLASSAAVTTVSPFVGPVDKGVCTDREEFGPSSVPSGASDAAAEFILGATV*(+) METITYQQAITPVSDTAKPPFPGAQDASRHGSVPDDEPVGNYSPKQTQPPAEILDVSPYSLSKA KSTGQGAKTPTGHQASSPETQLGSSQTQGEAAPAEQKFAASDEKSAKASKSFDSAEPREDTDAA TTDQTIVPPTNVTQVTSSTPDASDTLSRVQESSPHDGQIRNLGNPLIASQEEASRAGGEGSLEV HSNIVDEKKTLPSSQAQSSSTGSDSTQMGGDAGLSDAGVPATSSIEKQEAEPPARTQAPTSKGL QDIGNIESQGQALTDQTVAPKMNSAAASDAPEGTELGPNSSRSVQTPLSTGPTKGDTVVTAADE AKDMETITYQQAITPVSDTAKPPFPGAQDASRHGSVPDDEPVGNYSPKQTQPPAEILDVSPYSL SKAKSTGQGAKTPTGHQASSPETQLGSSQTQGEAAPAEQKFAASDEKSAKASKSFDSAEPREDT DAATTDQTIVPPTNVTQVTSSTPDASDTLSRVQESSPHDGQIRNLGNPLIASQEEASRAGGEGS LEVHSNIVDEKKTLPSSQAQSSSTGSDSTQMGGDAGLSDAGVPATSSIEKQEAEPPARTQAPTS KGLQDIGNIESQGQALTDQTVAPKMNSAAASDAPEGTELGPNSSRSVQTPLSTGPTKGDTVVTA ADEAKDMETITYQQAITPVSDTAKPPFPGAQDASRHGSVPDDEPVGNYSPKQTQPPAEILDVSP YSLSKAKSTGQGAKTPTGHQASSPETQLGSSQTQGEAAPAEQKFAASDEKSAKASKSFDSAEPR EDTDAATTDQTIVPPTNVTQVTSSTPDASDTLSRVQESSPHDGQIRNLGNPLIASQEEASRAGG EGSLEVHSNIVDEKKTLPSSQAQSSSTGSDSTQMGGDAGLSDAGVPATSSIEKQEAEPPARTQA PTSKGLQDIGNIESQGQALTDQTVAPKMNSAAASDAPEGTELGPNSSRSVQTPLSTGPTKGDTV VTAADEAKDMETITYQQAITPVSDTAKPPFPGAQDASRHGSVPDDEPVGNYSPKQTQPPAEILD VSPYSLSKAKSTGQGAKTPTGHQASSPETQLGSSQTQGEAAPAEQKFAASDEKSAKASKSFDSA EPREDTDAATTDQTIVPPTNVTQVTSSTPDASDTLSRVQESSPHDGQIRNLGNPLIASQEEASR AGGEGSLEVHSNIVDEKKTLPSSQAQSSSTGSDSTQMGGDAGLSDAGVPATSSIEKQEAEPPAR TQAPTSKGLQDIGNIESQGQALTDQTVAPKMNSAAASDAPEGTEL(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ma et al., 2021b |