Plant Circular RNA Database

Detail information of Os08g0451000_circ_g.1

			
						 General Information
					
						CircRNA Name
						Os08g0451000_circ_g.1
					
						ID in PlantcircBase
						osa_circ_037251
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr8: 22014862-22017674  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os08g0451000						
					
						Parent gene annotation
						
							Sec34-like protein family protein. (Os08t0451000-01)
							
						Parent gene strand
						+
					
						Alternative splicing
						
							Os08g0451000_circ_g.2 						
					
						Support reads
						1
					
						Tissues
						root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os08t0451000-01:9

General Information
CircRNA Name	Os08g0451000_circ_g.1
ID in PlantcircBase	osa_circ_037251
Alias	NA
Organism	Oryza sativa
Position	chr8: 22014862-22017674 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer
Parent gene	Os08g0451000
Parent gene annotation	Sec34-like protein family protein. (Os08t0451000-01)
Parent gene strand	+
Alternative splicing	Os08g0451000_circ_g.2
Support reads	1
Tissues	root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os08t0451000-01:9

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							TCAAGCGGCGATTCGAGGTAATGGTTCAGCAAAAAATGTTGTTACAGAGGGTGTGGAAGCATCC
CTTATCTATGTTCGCTTCAAGGCAGCTGCTAGTGAGgagaaaagtttagtgaaggatgggggtg
tggttgtgccagaaaaagaggctgcattagaggagggtgcaatggatgcagtcttggtgaatac
gcatcagg

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							GAGAAAAGTTTAGTGAAGGATGGGGGTGTGGTTGTGCCAGAAAAAGAGGCTGCATTAGAGGAGG
GTGCAATGGATGCAGTCTTGGTGAATACGCATCAGGTTAGTTTCATAATCTTGTTGATATATCA
CTTGTATGATTGATCAGAGAATTTCGGTATTCTATCTATTCAACCTTAAGTTGTGTCAGGATAG
AAGGTAAACTATTTCTGCAGGTTGAGCTAATACCTTTATTACCTCCTGTAGTTCTACAAATGGT
TTTCTGAACTGGAATCAGCTATGAAATCTGAGGTTTGTGCATGTTCATTTCTTTTGTTAGTGAT
GGCAACTTGTGGTAAAACAATGATTTTACCCCTCTAGTTTATTTGACAGACGGAAGAAAAGTAT
CGTCTCTACGAGAGTACATTAGAGGAACGTGTTAAAACATGTGATGGTATTCTTCAACAAGTAG
GTTTATGAACCCTTTTGTTTGTTAATATTTGCAAAATCTTTTAAGGAACATGGATGCTCTTATC
CTTTTCAATATAACATATTTAAAATATGTCCATTCAGGTGGATGACACACTGAACTTATTTGAA
GAACTGCAATCGTTGCATTTGAGTGTTGCCACAAAGACAAAAACTTTGCACGATGCTTGCGACC
AACTTGTATGCACCCTTTTCTCTAAGATTCTAAATACTTGCACTTTTGCTATTCTTTCTGTTAT
TTTTTTGGCATTTTGTCAGATTAGTTATTTATAGTGAAACTTCCACTCTAAAGGACTGTTACTC
TGCCATGTGCACATAAACCACTTTTAAGAATGTATTCAATATTAGTGAAACTTAACAGATCGCC
TGCCTTGTATTGTGCAGCTTTGGTAAATTTACAATATGGCATTTTAGGTGCCCAAAGGAAAAAC
TCATTGGCCTGTTTGTCATCTTGGACCTCATGTTAATGATCTTATTAGTGATATATTTTGTATA
GCTCTTATCTACTCTTTTAGTTTGAACAGAATTACAAAATTCTTTGATGCAGTTTCAACACATA
TAGATTTAACATTACAAAACTGTTGCATTAATAAAAACAAATCATTCTAGTAATCTTTTGTTTG
TAGGAACTGTATTATGATCTACAAGCATGCTTCATTTCATATACCCCTGTTTGAGATAATTTTT
TGACCAGATTATTGCTAAGGATTATCTACTTTAAAAGCAGGGAAAAAGGAAATATTTTGAGAAA
TAAACTTAACAAACAGCTTAGAACAAGTGATCTAAGCAATGCAGTAGTTTTTTTTTTGGAAAAC
GTATTTTTCGAAGCATGAAGCAAATAATCCGTTTCAACAATCTGGTGAATAATCTGAAAAGAAC
AGGGCCTAAATGAACACATGAGTTACCTTTTAACTACCCTTTTTTGTGTAGTATTCTCTTAGTT
TATTCATGTCGTAAATGCAAATATATATTCTCATTTTGCCATATTGCTGGTCCCTCTTCCGTTT
TTTTAATGAAGTGTTTCAGTCAATGGACTATCATTTCTAAATTCGAATGTAATGCAGTTGTTGG
AGAAACAAAGGCTGATTGAGTTTGCAGAAGCACTTCGAAGTAGGTTGAACTACTTTGATGAATT
GGAAAATGTAAGGTTTGGCATCCCTAGTTTGTCTATTGAGCATTAGATTAATAAATTTGATTAA
ATTAATGCCTCTCCTACAAGTTCTACATCTCACACAAGCATAATGAATTCTGCCATACATCTAC
TTTGAAATTTAATTGTTGAACTTATGTGAAACCTTATTCAAAATTTCCAACGTTATCTACTACA
TCCTAATGCTTGCATCCTTGATCATTTTGTTAGTTGGAGAGGTCAGCATGGTCTCCGTGGTTCA
TTTGTTCCAGAAAATGTTTATTCCATGTTTCGGAGGATATATACTTTAGATTTGATCCCAATGG
ATGTCTTAGATCTGAATTTTGAGCTGATTCGTATTGTCACCTTGTGGTTAGTGCTAACTTGTAC
ATGATGATGAGTGGCTTGTATTTTTGAAGATCCCACTGTTTGCTACTGTTCTAGTATATTCTGT
AGCTGCATAATCTTGAACATTTCTGGCCACTAACCACACTTATTCAATTCTACCATCCAAGTAC
ACAATGTATCCTGATGATCTCATTCATACATTATCTGTAATGTTGATTACACAATCTGTTTTTT
TTAAAATCCTATTTTTTCTCTGGTTAACCTGCTTCATATGGTTTAAAATACTGTCTCCATTTTG
CAGGTCTCTACTAGCTTTTATTCTCAAACTATGAACATCGGAAATGAACAATTTCTTCCACTTT
TGAAACGGCTCGATGATTGTATTTCGTAAGTAGTAATAGACAATGCTCTGTGTGTAGTTTTAGG
GTGCTGAGATTTAAGGAGTTCATGCTGTATCCTGTTTGGGTGCTTATAGGTATGTTGAAAATAA
TCCACAATATGCTGAATCTGCGGTGTACTTGGTTAAGTTTCGCCAACTTCAGGTAAAGGTCTAC
TTGAATTGAACTACATGGATAGTCATCACAGGTTAGATACTTTGACCTGATAATTATATGCTTC
TTTTATTGCAGTCTCGTGCATTAGGTATGATTCGGTCACATGTCCTGTCAATACTTAAAGCCGC
TTCATCCCAGGTGATTTTCAGTTGAACTTTGGTAGGTAAATGCGATATGACTACTAAATACCAG
ATAATAGCTTGATTTTATTTCAGGTTCAAGCGGCGATTCGAGGTAATGGTTCAGCAAAAAATGT
TGTTACAGAGGGTGTGGAAGCATCCCTTATCTATGTTCGCTTCAAGGCAGCTGCTAGTGAG
						
					

			
		

Sequences
Splice junction sequence	TCAAGCGGCGATTCGAGGTAATGGTTCAGCAAAAAATGTTGTTACAGAGGGTGTGGAAGCATCC CTTATCTATGTTCGCTTCAAGGCAGCTGCTAGTGAGgagaaaagtttagtgaaggatgggggtg tggttgtgccagaaaaagaggctgcattagaggagggtgcaatggatgcagtcttggtgaatac gcatcagg
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	GAGAAAAGTTTAGTGAAGGATGGGGGTGTGGTTGTGCCAGAAAAAGAGGCTGCATTAGAGGAGG GTGCAATGGATGCAGTCTTGGTGAATACGCATCAGGTTAGTTTCATAATCTTGTTGATATATCA CTTGTATGATTGATCAGAGAATTTCGGTATTCTATCTATTCAACCTTAAGTTGTGTCAGGATAG AAGGTAAACTATTTCTGCAGGTTGAGCTAATACCTTTATTACCTCCTGTAGTTCTACAAATGGT TTTCTGAACTGGAATCAGCTATGAAATCTGAGGTTTGTGCATGTTCATTTCTTTTGTTAGTGAT GGCAACTTGTGGTAAAACAATGATTTTACCCCTCTAGTTTATTTGACAGACGGAAGAAAAGTAT CGTCTCTACGAGAGTACATTAGAGGAACGTGTTAAAACATGTGATGGTATTCTTCAACAAGTAG GTTTATGAACCCTTTTGTTTGTTAATATTTGCAAAATCTTTTAAGGAACATGGATGCTCTTATC CTTTTCAATATAACATATTTAAAATATGTCCATTCAGGTGGATGACACACTGAACTTATTTGAA GAACTGCAATCGTTGCATTTGAGTGTTGCCACAAAGACAAAAACTTTGCACGATGCTTGCGACC AACTTGTATGCACCCTTTTCTCTAAGATTCTAAATACTTGCACTTTTGCTATTCTTTCTGTTAT TTTTTTGGCATTTTGTCAGATTAGTTATTTATAGTGAAACTTCCACTCTAAAGGACTGTTACTC TGCCATGTGCACATAAACCACTTTTAAGAATGTATTCAATATTAGTGAAACTTAACAGATCGCC TGCCTTGTATTGTGCAGCTTTGGTAAATTTACAATATGGCATTTTAGGTGCCCAAAGGAAAAAC TCATTGGCCTGTTTGTCATCTTGGACCTCATGTTAATGATCTTATTAGTGATATATTTTGTATA GCTCTTATCTACTCTTTTAGTTTGAACAGAATTACAAAATTCTTTGATGCAGTTTCAACACATA TAGATTTAACATTACAAAACTGTTGCATTAATAAAAACAAATCATTCTAGTAATCTTTTGTTTG TAGGAACTGTATTATGATCTACAAGCATGCTTCATTTCATATACCCCTGTTTGAGATAATTTTT TGACCAGATTATTGCTAAGGATTATCTACTTTAAAAGCAGGGAAAAAGGAAATATTTTGAGAAA TAAACTTAACAAACAGCTTAGAACAAGTGATCTAAGCAATGCAGTAGTTTTTTTTTTGGAAAAC GTATTTTTCGAAGCATGAAGCAAATAATCCGTTTCAACAATCTGGTGAATAATCTGAAAAGAAC AGGGCCTAAATGAACACATGAGTTACCTTTTAACTACCCTTTTTTGTGTAGTATTCTCTTAGTT TATTCATGTCGTAAATGCAAATATATATTCTCATTTTGCCATATTGCTGGTCCCTCTTCCGTTT TTTTAATGAAGTGTTTCAGTCAATGGACTATCATTTCTAAATTCGAATGTAATGCAGTTGTTGG AGAAACAAAGGCTGATTGAGTTTGCAGAAGCACTTCGAAGTAGGTTGAACTACTTTGATGAATT GGAAAATGTAAGGTTTGGCATCCCTAGTTTGTCTATTGAGCATTAGATTAATAAATTTGATTAA ATTAATGCCTCTCCTACAAGTTCTACATCTCACACAAGCATAATGAATTCTGCCATACATCTAC TTTGAAATTTAATTGTTGAACTTATGTGAAACCTTATTCAAAATTTCCAACGTTATCTACTACA TCCTAATGCTTGCATCCTTGATCATTTTGTTAGTTGGAGAGGTCAGCATGGTCTCCGTGGTTCA TTTGTTCCAGAAAATGTTTATTCCATGTTTCGGAGGATATATACTTTAGATTTGATCCCAATGG ATGTCTTAGATCTGAATTTTGAGCTGATTCGTATTGTCACCTTGTGGTTAGTGCTAACTTGTAC ATGATGATGAGTGGCTTGTATTTTTGAAGATCCCACTGTTTGCTACTGTTCTAGTATATTCTGT AGCTGCATAATCTTGAACATTTCTGGCCACTAACCACACTTATTCAATTCTACCATCCAAGTAC ACAATGTATCCTGATGATCTCATTCATACATTATCTGTAATGTTGATTACACAATCTGTTTTTT TTAAAATCCTATTTTTTCTCTGGTTAACCTGCTTCATATGGTTTAAAATACTGTCTCCATTTTG CAGGTCTCTACTAGCTTTTATTCTCAAACTATGAACATCGGAAATGAACAATTTCTTCCACTTT TGAAACGGCTCGATGATTGTATTTCGTAAGTAGTAATAGACAATGCTCTGTGTGTAGTTTTAGG GTGCTGAGATTTAAGGAGTTCATGCTGTATCCTGTTTGGGTGCTTATAGGTATGTTGAAAATAA TCCACAATATGCTGAATCTGCGGTGTACTTGGTTAAGTTTCGCCAACTTCAGGTAAAGGTCTAC TTGAATTGAACTACATGGATAGTCATCACAGGTTAGATACTTTGACCTGATAATTATATGCTTC TTTTATTGCAGTCTCGTGCATTAGGTATGATTCGGTCACATGTCCTGTCAATACTTAAAGCCGC TTCATCCCAGGTGATTTTCAGTTGAACTTTGGTAGGTAAATGCGATATGACTACTAAATACCAG ATAATAGCTTGATTTTATTTCAGGTTCAAGCGGCGATTCGAGGTAATGGTTCAGCAAAAAATGT TGTTACAGAGGGTGTGGAAGCATCCCTTATCTATGTTCGCTTCAAGGCAGCTGCTAGTGAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.108418761

Conservation Information
Conserved circRNAs	NA
PMCS	0.108418761

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							22014932-22017671(+)
22017462-22014871(+)
22014918-22017669(-)
						
						Potential amino acid sequence
						
							MDAVLVNTHQFYKWFSELESAMKSETEEKYRLYESTLEERVKTCDGILQQVDDTLNLFEELQSL
HLSVATKTKTLHDACDQLLLEKQRLIEFAEALRSRLNYFDELENVSTSFYSQTMNIGNEQFLPL
LKRLDDCISYVENNPQYAESAVYLVKFRQLQSRALGMIRSHVLSILKAASSQVQAAIRGNGSAK
NVVTEGVEASLIYVRFKAAASEEKSLVKDGGVVVPEKEAALEEGAMDAVLVNTHQFYKWFSELE
SAMKSETEEKYRLYESTLEERVKTCDGILQQVDDTLNLFEELQSLHLSVATKTKTLHDACDQLL
LEKQRLIEFAEALRSRLNYFDELENVSTSFYSQTMNIGNEQFLPLLKRLDDCISYVENNPQYAE
SAVYLVKFRQLQSRALGMIRSHVLSILKAASSQVQAAIRGNGSAKNVVTEGVEASLIYVRFKAA
ASEEKSLVKDGGVVVPEKEAALEEGAMDAVLVNTHQFYKWFSELESAMKSETEEKYRLYESTLE
ERVKTCDGILQQVDDTLNLFEELQSLHLSVATKTKTLHDACDQLLLEKQRLIEFAEALRSRLNY
FDELENVSTSFYSQTMNIGNEQFLPLLKRLDDCISYVENNPQYAESAVYLVKFRQLQSRALGMI
RSHVLSILKAASSQVQAAIRGNGSAKNVVTEGVEASLIYVRFKAAASEEKSLVKDGGVVVPEKE
AALEEGAMDAVLVNTHQFYKWFSELESAMKSETEEKYRLYESTLEERVKTCDGILQQVDDTLNL
FEELQSLHLSVATKTKTLHDACDQLLLEKQRLIEFAEALRSRLNYFDELENVSTSFYSQTMNIG
NEQFLPLLKRLDDCISYVENNPQYAESAVYLVKFRQLQSRALGMIRSHVLSILKAASSQVQAAI
RGNGSAKNVVTEGVEASLIYVRFKAAASE(+)
MSCQYLKPLHPRFKRRFEVMVQQKMLLQRVWKHPLSMFASRQLLVRRKV*(+)
MQPLFLAQPHPHPSLNFSPH*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	22014932-22017671(+) 22017462-22014871(+) 22014918-22017669(-)
Potential amino acid sequence	MDAVLVNTHQFYKWFSELESAMKSETEEKYRLYESTLEERVKTCDGILQQVDDTLNLFEELQSL HLSVATKTKTLHDACDQLLLEKQRLIEFAEALRSRLNYFDELENVSTSFYSQTMNIGNEQFLPL LKRLDDCISYVENNPQYAESAVYLVKFRQLQSRALGMIRSHVLSILKAASSQVQAAIRGNGSAK NVVTEGVEASLIYVRFKAAASEEKSLVKDGGVVVPEKEAALEEGAMDAVLVNTHQFYKWFSELE SAMKSETEEKYRLYESTLEERVKTCDGILQQVDDTLNLFEELQSLHLSVATKTKTLHDACDQLL LEKQRLIEFAEALRSRLNYFDELENVSTSFYSQTMNIGNEQFLPLLKRLDDCISYVENNPQYAE SAVYLVKFRQLQSRALGMIRSHVLSILKAASSQVQAAIRGNGSAKNVVTEGVEASLIYVRFKAA ASEEKSLVKDGGVVVPEKEAALEEGAMDAVLVNTHQFYKWFSELESAMKSETEEKYRLYESTLE ERVKTCDGILQQVDDTLNLFEELQSLHLSVATKTKTLHDACDQLLLEKQRLIEFAEALRSRLNY FDELENVSTSFYSQTMNIGNEQFLPLLKRLDDCISYVENNPQYAESAVYLVKFRQLQSRALGMI RSHVLSILKAASSQVQAAIRGNGSAKNVVTEGVEASLIYVRFKAAASEEKSLVKDGGVVVPEKE AALEEGAMDAVLVNTHQFYKWFSELESAMKSETEEKYRLYESTLEERVKTCDGILQQVDDTLNL FEELQSLHLSVATKTKTLHDACDQLLLEKQRLIEFAEALRSRLNYFDELENVSTSFYSQTMNIG NEQFLPLLKRLDDCISYVENNPQYAESAVYLVKFRQLQSRALGMIRSHVLSILKAASSQVQAAI RGNGSAKNVVTEGVEASLIYVRFKAAASE(+) MSCQYLKPLHPRFKRRFEVMVQQKMLLQRVWKHPLSMFASRQLLVRRKV(+) MQPLFLAQPHPHPSLNFSPH(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os08g0451000_circ_g.1

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