Detail information of BGIOSGA003152_circ_ag.1


General Information
CircRNA Name BGIOSGA003152_circ_ag.1
ID in PlantcircBase osi_circ_011451
Alias Chr01:8450764_8455146(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr1: 9094106-9098493  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ag-circRNA
Identification method CIRCexplorer2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA003152_circ_g.1 BGIOSGA003152_circ_g.2 BGIOSGA003152_circ_g.3 BGIOSGA003153_circ_igg.1
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   GC-CA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGTTGGCACAGAACTCTTGATTACACCAGATACCACTTTGCTACTGGAGCTGTACAATCTGAAG
AAGGGGGATCGGGGCAAAGCAATATTTCGACACAAGgtttgatgcactaattcgaagccatgtt
cagaaagaacagcttatcacacttatacaacaaaaggaagtcgtgggagatctttttaaccagc
ttcggctg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTTTGATGCACTAATTCGAAGCCATGTTCAGAAAGAACAGCTTATCACACTTATACAACAAAAG
GAAGTCGTGGGAGATCTTTTTAACCAGCTTCGGCTGGCTCTGCAGAGACGAACAAATTCACGCC
CAGCACAGGTATTAATGTCTTAAATTGGAACAATGAAGCTTTTGTTAGCTTTAACATGTCTCAA
TTTTCTCTCTTGAGAAACATGAGATTCTGCCCTATACATTATGTTGGTAACAGTATAATTTCAG
CTGTTCTAATCTATCATGTAGTAACTATCTTAATCTTAAGCCAAAAATAAAGATAGTTTGGTGA
TTTAGTTTATTTTCTACTGAAGTATCAATTTTTCTTTTCCAGACGCTTGCTGCTACTTGTATGG
ATGATCAGGAGCTTACAGAAAGTATGCAAAAGTTGCTCATTGTTATGCAGAGATTAGATGAAAA
AATTGCACCAATGCTAGAATCAGATGGAGAGCTGTTCAATAAAAGGTAAAGCAGGCATGCAGTC
ATTGCGTAATTCCTCATGTCTTTGAATGCAAGAAACATCTGAAATTCGTCGCTTCTAGATCTGT
TGCCCTATGTATTTTTGCAGAAAAATCATATTTTAAAGGCCATGTTTCAGACCTCTCATTCAGA
AAGGTTTGTGAATCTTAAAGAAAAAAGCAGTTACTAATGATAATGGGTATTCTTGTATCAGTAA
TAATAGGCTGGCCTATTATGAAATGACTCTTAGGGTGCAATGAGGTGTGAAAAGTTAAATATAA
GACCGTGCTAAGATAGATTGCTCGAGAACCCACTTTTTTCTTGCTGATGCTTTGCTTCCCTTCT
ATGATATACTGTCGTTACTTCACTCCAATTCCATCCATTGGACACAGTGGATATGGGAATCCAA
TCAAATAAGTAACAGTTAGTTGCAGTTGTAATTCTTTTTCGTAGTTGCATTTGTAATTTGATGA
TTGAGAGTTGAGAATATCAACAGGGTTAACTTGCAATTAGCTTCTCATATCTTCCTCTTTTTCA
TTAAAGAATATCTTCAATCTGAGGAAATGAGGAGTATGCTAGGACCAACCCTTAGTGCTAGGAC
CATAGCCTTTTAATCTATGATTGGATGGTTAGATTTGATTTTATGCAATGAGGTTGGGTTTGGC
CAATCACATTTAATCATGCTTTCATGGGGTTGTGGTTTTGAACCATACTGAAACAAACTTGTGG
AATCCAGACACCATAATTTATCCTTATTTGCCCCTAATCATTAGTAACTACTTTTGGTCTAACG
TTCATTAACACCTTTTAGAAGAGCGGTTACGACGCGAGGCCCTTTGCATTTATATGTTTTGTTG
CTTCCGAATCCCAGTGAATCTTTGATATTTGCTTTTTGTTTATAATGCCTATGCCAGAACTACA
GAATTATAATACCTTTGTAAGCTAAGCAAGCATTTTTTTTTTTGCCTGTTAAGATGGGGTTGGC
TATCACGTACGGGCCTATGGGATAAGAGTCATCTGACGAGGCAAATTGAAAAGTGAGTGGTTAT
GGTTTTGCAGTGGTGAATATTATTTTATGAGCCCAAATTTTATCTGTGTAAATGCAATTATTTT
GTCCTCGGTGCAGATATGCTGATATATACACATCAAGGGTTTCAAATTTTCTACATTATACTCC
ATTCATGTATTTCCAATCACAAGAACAGGTAATTGCAAAACTCTAGATGATTTATTTCCCTTTT
ACCTTCTACATTTTTATCATAGTCATTTCGACTGATTGAGACCTGATATTTCTGTTTCCTTAAA
ACAATCAAAGACAAAAATTTGAGCAGCAAGTAGAGCTGTGTCTTGTTTGCTAAATCTGCCAAAA
TGAAAAACACTACATCTGGTTGCAGAATGCAGCATATGTTCAGTTTGCTATCACCAGTTCCGTA
AAGACAGTAGAACATCCAAATGCTCTGACTTCCATGCTATCGTCTCTTTAGCCCACTGTTTAAT
GTCTCTTCATAAGATAATCACTGCCGCACTCCCCGTCTCATCTGTTTTACGACCTTGTTTATCC
TCTGAGCACATGTTACAGACGCTTGGGCATGACGTGCATTCCTATTCCCGGAGGCAACAACACT
GACATTCGTTCGATTCATCATTCATGTGGAGGAGTTGGGAGAAAAATCGGTAGAGATAGAAAGG
CAGCTGGATGGACGTGCTTGTGCCAGTGTGTGAGCCGTGGCGATTGATCTTGATGCAGCGAGGC
AGGCCATTTGGAACGTTTTCGCGTTACGTAGCGATTATGTCGTGTATAGCTGTGTGTACTTGGG
GTGTAAGTAGAGTCATTAGCTTGTAATAACACGATTGGAATAAGCCCGTGCGGTCGTTTTCTTC
TTTCTGCTCCCCGAGTCAAAAGAAATTTGGTTTGGTTAGGCAGAACGACCGTGGAAAGTTGGGC
ATGTAATTTGTAAACTTTTAAGTTTTGTAAGATTTTCATCTGATCATCTCAGCATCTGTCTAAA
CTCTGGACTGTCACTTGAAACAGTTAAATTCCAGAAAAATAAGAAGTCCCATTGTTGTATGCTT
TTTTTTCGTATGTTTTCATAAATTAGTTGAGCTGCTCTGATCGTTTGAGCTTGGGCTATGTGGA
AACATGAACAAAGCAGCCGAAAACAATTTGTAAGTAAAACTTTTATATTTTTAGTATGTGTTAT
TTGTAGTTTAAAAGTCAATGCTGAAAAACAGACTTGGATAAAAAAATCCAAATGAACTCCAAAA
TTAAAAATTAAAATTCACATTTAGTCTATGACTGATAATAATCTAAAAACAGATGACTGGTTGA
GAAGCCAGATTGCATGAAGCTTTTTTTTTTTAGAGCTTTTTCATCACCTAACAAGTGAATAAAA
TAAAGAGGGATTTACATCTGAGATTGGAGAAAAAACAAGTCCAACTCCATACTTGTATTTGAGT
TTTCCCTAACGAATTTGTATTTCGAAATTTTTGACAAAATACGCTTGTACTGTGTGTGCAGTTC
GATCGAGTATAACCCGCACTTTCTCAAGGCAAACCCCCTATCCTCGCCTCGGTCACCAGCTGCC
TTTGCGCCGCCCGCGTCCGACGCGCGGCGGCGGCGGAGATGTTGCGGCGGATGCGATGGATGGC
GGACGGGGACGGGCGGTGGGAGCTGGACGTGGAGACGCCGGCGACGATGGAGGGCGCGGCGCGC
CCCGTCCCCGGCGACCCGCTGCCGCTCGGCCTCTCGCGGGGGCCCCGGGTCACCCGCACGAAGC
AGCTCGACTTCCTCCACCGCTTCATGGCCTCGCCGCTCGTCCCCTCCTTCTCCGCCTCCGGCGC
CGGCCTCTCCGTCCACCACGCCCACCTCGTCCACCTCGCCCACAACTTGTAAGTGGTAACTGAA
AGTCACTCCCGTCTCCCCCCACTCACGGTCGATCTTACGAGAGAGAGATATATATATATATATA
TATATAGAGAGAGAGAGAGAGAGAGAGAGAGACAGAGGAAGTGCTCGTATTTAGGCTGCTGCGG
TTAATTAGATAGCGAAATGCAGGCTTGCAATGTTGCAAAATTCAAGTGAGAAAAATGGTATCTG
TACATATCTACGCAGCTCAAGTTTATGCGGTTATTAGATTCTGAAATGTGGTTCGCAACGTCAC
GCCGCTCAAACTTCTAATGAACTGACGATGGATGTGTTTTTGTGTGCTTGGTTCCTGTAGGTTC
ATTTGAGGTAACCGTGGAATCATTCTTGCTATGTAGTCTGCTTTTTTCTTAAATGGTTCGAGAT
TGGTTTCGGGATTATGTAAAAAACATCTGCTTGGAGCCATCACCTTCTAGTCCATATATGCCAA
TGTATGTGATTGAGTATGTGTCAGGAGACTCAGGATCTCAAGGGCAATGGTTTCTGTACCCGCT
TACCAATCATCAACAGTCTGCTAGATAAACCATCAGTAGTAGATTTGTCCAGTTCTGTTTCTAA
ACAGAATTTGGATATTATTTTCGTTCATTCCAACCCTTTCCTGTCATAGGCAAAAAAAATCTGT
AAAATTCAACGATTGCTTGCCCCTGATTGTGACATATGCACTGGCATTAACAACCCGGTGTGTA
AGATGTATCTGACCAAAACACATGTGCACTACCATTAACGACCCGGCGTATTCTTTTCAGGTCT
TTTACTATCTTGGAGCAACTTCATGTACAGAAGCTTGTAGCTGTTGTGAAAGAGAAGTTATCAA
ATCGGCAAGAGGTCTCCTGGTCCAATGATATCAAAAGGCACCTGCATGATGTTATGTCTCTAGG
TGTTGGCACAGAACTCTTGATTACACCAGATACCACTTTGCTACTGGAGCTGTACAATCTGAAG
AAGGGGGATCGGGGCAAAGCAATATTTCGACACAAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs osa-miR531b
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021