Detail information of Zm00001d028568_circ_g.1


General Information
CircRNA Name Zm00001d028568_circ_g.1
ID in PlantcircBase zma_circ_000594
Alias circ2520
Organism Zea mays
Position chr1: 39397513-39398403  JBrowse»
Reference genome AGPv4.38
Type   ue-circRNA
Identification method CIRCexplor2
Parent gene Zm00001d028568
Parent gene annotation Serine/threonine-protein phosphatase
Parent gene strand +
Alternative splicing NA
Support reads 16
Tissues seedling leaves
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered Zm00001d028568_T006:2
Zm00001d028568_T007:1
Zm00001d028568_T001:2
Zm00001d028568_T003:2
Zm00001d028568_T005:2
Zm00001d028568_T002:1
Zm00001d028568_T004:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCAAATTCTGAAACCTGCTGAGAGAAAAAACAAATTTATGGGGTCCAACAAAATGTGATAGTGA
AAGCCATTTTGCTTCCAGCAGCTCTAGCCTGTTAAGggtgacatccatggtcaatacagtgatc
ttctaaggctttttgaatatggaggctttcctcctgaagccaattatctattcttaggtgatta
tgttgatc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTGACATCCATGGTCAATACAGTGATCTTCTAAGGCTTTTTGAATATGGAGGCTTTCCTCCTG
AAGCCAATTATCTATTCTTAGGTGATTATGTTGATCGAGGCAAACAAAGTTTGGAGACTATATG
CCTTCTTCTTGCTTACAAAATCAAGTACCCTGAGAACTTTTTTCTTCTGAGGGGCAATCATGAA
TGCGCCTCAATAAACAGAATATATGGATTCTATGATGAATGCAAGCGTCGATTTAATGTGCGGC
TATGGAAGGTCTTCACAGAATGTTTTAACACTCTACCTGTGGCTGCTCTTATCGATGATAAAAT
ATTATGTATGCACGGTGGACTCTCTCCTGATCTAGCACACTTGGATGAGATAAAGAACTTGCAG
CGTCCAACTGATGTACCAGATCAAGGTCTACTGTGTGACTTGCTTTGGTCAGATCCAGGAAAAG
ATGCTCAAGGGTGGGGCATGAATGATAGAGGGGTCTCATATACCTTTGGTGCTGACAAGGTTTC
AGAATTCTTGCAAAAGCATGATCTTGATCTTATCTGTCGTGCTCACCAGGTACCGCCTTAGCAT
TTAGTGCAGCTTCTGTTTTGATCTTTTTATTTCACAGTTAACTGGAAATTGAAGGTGTTTATAT
TGCATGCGATGTGATGTCAGGTTGTCGAGGATGGGTATGAATTTTTTGCTGACAGACAGCTTGT
CACCATATTCTCGGCCCCCAATTATTGTGGTGAATTTGATAATGCTGGTGCAATGATGAGTGTC
GATGAAACTTTGATGTGCTCATTCCAAATTCTGAAACCTGCTGAGAGAAAAAACAAATTTATGG
GGTCCAACAAAATGTGATAGTGAAAGCCATTTTGCTTCCAGCAGCTCTAGCCTGTTAAG
Conservation Information
Conserved circRNAs osi_circ_014182*
PMCS 0.055780415
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chen et al., 2017b