Detail information of Zm00001d043555_circ_g.1


General Information
CircRNA Name Zm00001d043555_circ_g.1
ID in PlantcircBase zma_circ_001505
Alias circ667
Organism Zea mays
Position chr3: 203746851-203747650  JBrowse»
Reference genome AGPv4.38
Type   ei-circRNA
Identification method CIRI
Parent gene Zm00001d043555
Parent gene annotation Protein farnesyltransferase subunit beta
Parent gene strand -
Alternative splicing NA
Support reads 3
Tissues seedling leaves
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered Zm00001d043555_T002:5
Zm00001d043555_T004:5
Zm00001d043555_T001:6
Zm00001d043555_T003:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCAACCATGAGATTTACCTATTGATTGATGACAATGCTCTTTCGCTCCCTATTGTCACAAGTGT
ATTTACAGCAGCATAAGTCGTAGCTAGGTGAGGCAAcaatcaaactaggcaagtcaactttctc
tgcctcattaagcaggatcaaagcagccaatccacagaatgtataccttatgaatgcaactttg
ttaatgtt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CAATCAAACTAGGCAAGTCAACTTTCTCTGCCTCATTAAGCAGGATCAAAGCAGCCAATCCACA
GAATGTATACCTTATGAATGCAACTTTGTTAATGTTCTTAACATATAAATTTCAAACTTCACAG
AAATCCTTAGAAACATACCCACCATGTGCTTCAGCATAAGGCTCCCCAGCAATACCACCTTCAT
AAGTTTGACATCTGCAGTCATATAGTATATCAATTGAGCAACATTCTAGAAAAGAACTGTGACC
AAGCAACAATTTTGCAACTGGAAAAAATTGAATGTATATAACACAAACAAAACCTTGCTATGTA
GTCGCCTACACCTTTTGCCAGTTTAAAATCAAGAATATTCACAAGGCTGGCAACCTAAAGTCAA
CATCAGAAAATATCAAGTAACTGCAGAAAAATTGCAAAGGACCAAAAGAAACTCACCGATATAG
CGGTGTAGGAAGCACGGACATCAATTTCGCCACCATCATGCATTCTAGGGCAAAGGAAAAAATG
AGTGGCAGGCATCACCTCTGAAGGGCTACAACTGAGAAAGTGGTATCTGTACATTATCCACGCT
GATAGGTTGCGTACCTGAAAGCACCTGATACATCTTTCATCTGCAGCATAAAATTGTACAGGTT
GCCCCTGACCCACAAGGTAAACATAATTAACAAAATGACTCTTGTAGATCTTGTTTTAGAGCAA
CCATGAGATTTACCTATTGATTGATGACAATGCTCTTTCGCTCCCTATTGTCACAAGTGTATTT
ACAGCAGCATAAGTCGTAGCTAGGTGAGGCAA
Conservation Information
Conserved circRNAs NA
PMCS 0.30182476
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chen et al., 2017b