Plant Circular RNA Database

Detail information of Solyc04g008700.2_circ_g.2

			
						 General Information
					
						CircRNA Name
						Solyc04g008700.2_circ_g.2
					
						ID in PlantcircBase
						sly_circ_001277
					
						Alias
						4:2372079|2376972, Slcirc065
					
						Organism
						
							Solanum lycopersicum						
					
						Position
						
							chr4: 2372079-2376972  JBrowse»						
					
						Reference genome
						
							SL2.50.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						Segemehl, CIRI
					
						Parent gene
						
							Solyc04g008700.2						
					
						Parent gene annotation
						
							Pre-mRNA-processing protein 40C
							
						Parent gene strand
						+
					
						Alternative splicing
						
							Solyc04g008700.2_circ_g.1 						
					
						Support reads
						93/118
					
						Tissues
						fruit/leaf
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Solyc04g008700.2.1:5

General Information
CircRNA Name	Solyc04g008700.2_circ_g.2
ID in PlantcircBase	sly_circ_001277
Alias	4:2372079\|2376972, Slcirc065
Organism	Solanum lycopersicum
Position	chr4: 2372079-2376972 JBrowse»
Reference genome	SL2.50.38
Type	e-circRNA
Identification method	Segemehl, CIRI
Parent gene	Solyc04g008700.2
Parent gene annotation	Pre-mRNA-processing protein 40C
Parent gene strand	+
Alternative splicing	Solyc04g008700.2_circ_g.1
Support reads	93/118
Tissues	fruit/leaf
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Solyc04g008700.2.1:5

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							Yes							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							F: GGACGTGCAGCTAATCCTCATTT
 R: TTGATAATCCGTATCCTCGCTG
F: GATAATCCGTATCCTCGCTG
 R: CATGATCCACGCTTCGAGTCC
PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	Yes Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	F: GGACGTGCAGCTAATCCTCATTT R: TTGATAATCCGTATCCTCGCTG F: GATAATCCGTATCCTCGCTG R: CATGATCCACGCTTCGAGTCC PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							TAAATTAGAGAAGGATCCCCAAGGACGTGCAGCTAATCCTCATTTGGATCAGTCTGACTTGGAA
AAGCTTTTCCGGGAACATGTGAAGGTGTTGTATGAGgatatcagcgaggatacggattatcaat
cattcaaaaagaaatggagtcatgatccacgcttcgagtccttagatcgaaaggagagggaagt
gcttctga

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 645
Transcript exons: 2372079-2372185,2373481-2373604,2374786-2374929,2376275-
2376421,2376850-2376972
GATATCAGCGAGGATACGGATTATCAATCATTCAAAAAGAAATGGAGTCATGATCCACGCTTCG
AGTCCTTAGATCGAAAGGAGAGGGAAGTGCTTCTGAATGAGAGGGTTCTTCAGCTTAGGAAAGC
AGCTCAAGAAAAAGCTCATGCTGTACGTGCTGCTGTTATATCTCAGTTCAAGTCCATGCTTCGA
GAACAAGGAGATATTACTTTAAATACACGGTGGTCAAAGGTGAAGGATAGCTTAAGAAGTGATC
CTCGTTATAAGTCTGTTAAGCATGAAGACAGAGAGACTTTATTCAATGAGTATCTATCGGAACT
GAAGGCTGCTGAACAGGAAGTTGCACGAATTGCAAAAGCAAAACACGATGAAGAGGATAAATTG
AAGGAAAGAGAACGTGCTTTGCGAAAACGTAAAGAAAGAGAAGAACAAGAAGTGGAGAGGGTGC
GGTCGAAAGCTCGTAGAAAAGAAGCTGTTGAATCTTATCAAGCCTTGCTGGTTGAAATAATTAA
GGATCCTCAGGCTTCTTGGACAGAGTCAAAACCTAAATTAGAGAAGGATCCCCAAGGACGTGCA
GCTAATCCTCATTTGGATCAGTCTGACTTGGAAAAGCTTTTCCGGGAACATGTGAAGGTGTTGT
ATGAG
						
					

						Genomic sequence
						
							GATATCAGCGAGGATACGGATTATCAATCATTCAAAAAGAAATGGAGTCATGATCCACGCTTCG
AGTCCTTAGATCGAAAGGAGAGGGAAGTGCTTCTGAATGAGAGGTATTATTCAACTGGTTCAAT
CTTGGTTTAAGTTTCAATTACTCTCTGTCGCTTATTTCCTGATATTTTTCTCATCTCAGCCTTA
ATAAATGACTTGATATAGATATTTTTTTTGACACACTATTTTTGTACTCTCCTTCCCCTAGTTT
AAAAAAACTTGACTTGCGTTCCTCCTTTGTCAAATTCTAGAATACTTAAATCTAACTTGTTAAA
TGGACGTTTTTCATAGCATAAACTAATACTACATTATATTATTGTAGTTATTATGCGAGTCCTT
AGTAGCTTTAAATGTCCAGACAGCTTAATTTTTCCTGCCATCTTCCACTTGAAGTGCAGAATTT
GAAAAAACAGAATCCCATATGAACCATGATATATTACCAAATGCCATGGGAACTCTGGAAGTGT
GGAATTGTTGTCCAGGGATTGAGAAAGACATATGTTTTACTAGCACGTACAATTCTCCACAATG
TTTCTACCTCTTGATCAAATCTTCAAATCCACTATTGCAATAAACTAGTCCTATGAATCTTCAA
GTGCTTGACACCAAGGCCCCCTGAATCCTGTCTAAGGAAACAGTTCCCCACTTCACTGGAATGA
AGGATTTCTGTTTTCCATTTCCTTGCCACAAGAAGTTCCTTTTGAAGCTTATCCAACCTCTTGG
CCAGTAATACAGGTAAGGAAAGAGGCTCATTGTATAAATAGGTATGGAACCGAACACACTATTG
ATCAACGAGAAGAATGAAAGTGATTGACACATGAGTTCCTAGAACTGTAGCATTTAGGTGGCTT
TGCCTAGAAGCACAGGCGCTTGTATTGCGCTCCCACAACCCCATTTCACAGTTTAGGCTGCTCC
GATTTTGCTCGCCGCTACTACGGGAATCACTTTTGTTTTCTTTTCTCCTGGCTACTAAGATGTT
TCAGTTCGCCTGGTTGTCTCTTGCATGCCCATGAATTTTATTTTTGGAAGGGGGTGGGGTGGGT
TGGGGGATTTGCACCATCGGTGCGAGTGTTCCACCTTTTTTTAGTTGATGATCTGAGAATTTGT
AATGGGTAACATATTCAAAGAGATTTTGACAAGAATAGAACTTTATTTTTGCTTGTGCAAGTTT
GTGTTGCAACTATGCTCAGTTGCTGGAGGACTAATCAATGTAGTTAACATTCTCTGATCTTATT
CTTTTGCTGGTCTGGATTTGTTTTTCTCCTTTTGGTTCGTGGCAGTTTTAATATGATTTTATGT
ATTTCCATTTTTCTTTATAATGATCCGGTTGTTCAGGCAAGATGTATGTACTGTGTAGGGTTCT
TCAGCTTAGGAAAGCAGCTCAAGAAAAAGCTCATGCTGTACGTGCTGCTGTTATATCTCAGTTC
AAGTCCATGCTTCGAGAACAAGGAGATATTACTTTAAATACACGGTGGTCAAAGGTAGGTTTAT
ATGTTGAGATGTTATGATAAGAAAATTTCAGTATGAGTAGTTGTCTTGGAGATATTTTTACTTG
CTTGCAAATTGGTTGCTTTCTCTGCATTGGCATCCCTAGTTAAGATTGGAACTTCTGATGTTCC
TTGCTTAATTCTGTATATAGTAGTATGTGGCGCCTTCAACTTCTTAGTTTTCTCGAGTTCTGTT
ACATTTTCACTTCCTTTTAATTTTCTCAACAAACCTTTCATGTTCTCAATATGGTCGAACACTC
CGCATAACTAATGCCATGTTAAACTCCAATTCTCTTTAAATCTACAATGTCATCAAATTTATCA
ATAATTTCTTAACTTTGTGAAGTAAAACAAGAAGCCCATTACTTTAAATTAAGTGGCGCAGGTT
TATGCTGGGTGGTGCCAAAATAATTGACTTCCCTTAGACAGAATATCTCATCATTTCTTTTGTA
TTAAGACAGAATATCTCATCATTTGCTTTATGAAATTATAAGTATAGTGGATCACACTCCGAGA
TAATGTTTTTTATCTTAGAAAGTAAAAATAAAGGTAGCATCAACTTGAAAGAAAGGGCGTAGCG
GAATAATAGAATTAAAAATCTTGCTCTCTGGAACATCACCATTTTCAAAAAAGAAAATTTTTAA
AACCTTGCTTTCTGGAACTAAGATAATAGTCAAAACATCGATCAGTATCCATTTGAATTAGGTG
ATGAATATCATGTCTGCGAATCAACAAGAGAAAAATGATTTGTTCTTTGTTTCATTGTTTTATT
TTCTCAGGCAGTCCCCTGTCATCTTTTCTTAAAACCAATGGAAGTTATGCTCGGGTTTTCAATA
TTCATACGGTTCTTGCAGTTTTGCCCATTTCTTGAAATGCTCATGGGGGACAAAAACTACTTGC
CCTTGTTTTGGTTTTGATGAATACTCTATATAAAGTTTAGTTTAAACTTTTCTTTTCCCTCAAG
TTATCAGTCCCCTGTCGTCTTTCCTTAAAACCAATGGAAGTTATGCTCGGGATTCCAATATTCG
TACGGTTCTTGCAGTTTTGCCCATTTATTGAATTGCTCATGGGGGACAAAAACTACTTGCCCTT
GTTTTGGTTTTGATGAATATTCTATATAAAGTTTAGTTTAAATTTTTCTTTTCCCCTAAGTTGC
GATTTTCGGTTGATATTAGGTGAAGGATAGCTTAAGAAGTGATCCTCGTTATAAGTCTGTTAAG
CATGAAGACAGAGAGACTTTATTCAATGAGTATCTATCGGAACTGAAGGCTGCTGAACAGGAAG
TTGCACGAATTGCAAAAGCAAAACACGATGAAGAGGTGAGTTCTTTCCCAACGAATACAACATT
ACCATTCTACAAAAATAACTCTTCTCTTTTTCCAATTTTTGGCACCTTCTTTTTCTTTGTTTAA
GCATTTCTTCTTTCGACTTGGCTTTTGTTATATTATTTTATGAATATTTATTAGGGTAATCCAA
GTTTAATATCATACTATATCATTTTGGGTTTGTGTTCTCTCTCTCTCATATTATGGTCTTCCTT
TTTTGGTGGGGGAGTTAGATATCTCTCAACTGTCTTTCTAAAATATGGTTTTTAAATTTTTCCT
ATTAACCTGTAACTAGTTATATACTGTAAATCTCAATGTGGAACTTAAGTGTACAGATAACACC
TACGATTTGACTCTAACATGCAGTTAGTTCCTTGTCACCTCTCTTATTTACTTATCACGTAACC
AGTTACATCGTAAATCTTAATTTGGCACTTAAAACATACAGATAACACCGTTTGGATTGGCTTA
AAAGGTAGTTTTTAAAAAGCAAATTTTTAAAGTCAAACTTGAATGACGTATAAGTCAAAAAATA
AAAAGTAGGGAGAGTCCTACTTTTGACTTTTAACTTATTTTAAGTTATTTTAAATTTGCCAAAC
ACTCCTAAAAGCTAAAAATGACCTAAAAATAAGTTTGACCAACTTCGGAGTGAATCCTACCAGG
CTCTTAACATGTGGCTAATTCGTTGTCGCACACCCTAACCCACCCCGTCCTCTCTCTCTCTCTC
TCTTTTGAACATGCACACATATTATATATAGGGGTTAGAACTTTTAAGCCGTTTGTAGAGAGGA
CGAACACTTAAACCCCTATATTCTTAATTCTCTCTATCTCTCTCTGTCTTATGTTATTTCCCAT
GAATCCAAATGCACCTAGTTCCTCGAAGAAAATGCTCGAATCTAATTGGAACCTATCGTTGAAA
GAAAATGAATTTGTACCTAACTCAATTTCAAAAGCTAGTTCATCAGAGGTGAGAATTGCTCAAA
ACCATATAAGGTGACAACGCATACCTTCGACCAAGATGAAACTCTAACACCTCTTAACACGCGT
AGGTCATCTCTTCGGGTAGTTTAATCATATTCATTTGTCTTTATTCAATGGTTGTCTTTCAACT
CTGTTGATTCAAGCCACTGTGTTTGTGCCTCCAACTAAGGGCTCTCACTGATTCTCTCTATTAT
GTTGATTGTGGTAGACAACAAATAATTGTTGCTTTGTGATTTTAATTAATTTTACTTATTTAAG
TTATGTGTGTATTTGGACCGTCAATCTGAAGTTTTGGAAAAATCTGTATGTAGTACATGAGGTT
CTAAAGATGTTAATGGCTATCTGCCTGACTTTTTAGGATAAATTGAAGGAAAGAGAACGTGCTT
TGCGAAAACGTAAAGAAAGAGAAGAACAAGAAGTGGAGAGGGTGCGGTCGAAAGCTCGTAGAAA
AGAAGCTGTTGAATCTTATCAAGCCTTGCTGGTTGAAATAATTAAGGATCCTCAGGTATTATCT
TGTATAGACCCCAAAACTGTTGCAAGGAAATATCTTAGAACGTGTGTCATGGATCATATCCCAT
CATTTGATTAGACTGTTTGTCTGGATAGTTCAAGAACCTTGAAACAGAACTTCTGCTTCATCCT
AATAAGCTCATCAGCTGTTTGCCTGCCTTCATCTTAATTAAGAAACAAAATCCAAAAGAACTTT
CTTTGTTGCAAAGTCCATCGATTTTTACACGGTTGGTTTGCCTTCCTAAATTGTGTTGTAAATA
GCAATGCTCCTTGGTGCTCATCATTTATGTAGTTATAATTCTTGAGTTTGGGCTTTACAATTGT
GTTGTTTACTATGTGGTTAACTGTTGAAAGGTCATTCCGTTTTATTCTCTGGATGTCTATTTTC
AATTTTTTGAGATATCCTTCTGCCTTGCACCCAAGGCTTCTTGGACAGAGTCAAAACCTAAATT
AGAGAAGGATCCCCAAGGACGTGCAGCTAATCCTCATTTGGATCAGTCTGACTTGGAAAAGCTT
TTCCGGGAACATGTGAAGGTGTTGTATGAG
						
					

			
		

Sequences
Splice junction sequence	TAAATTAGAGAAGGATCCCCAAGGACGTGCAGCTAATCCTCATTTGGATCAGTCTGACTTGGAA AAGCTTTTCCGGGAACATGTGAAGGTGTTGTATGAGgatatcagcgaggatacggattatcaat cattcaaaaagaaatggagtcatgatccacgcttcgagtccttagatcgaaaggagagggaagt gcttctga
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 645 Transcript exons: 2372079-2372185,2373481-2373604,2374786-2374929,2376275- 2376421,2376850-2376972 GATATCAGCGAGGATACGGATTATCAATCATTCAAAAAGAAATGGAGTCATGATCCACGCTTCG AGTCCTTAGATCGAAAGGAGAGGGAAGTGCTTCTGAATGAGAGGGTTCTTCAGCTTAGGAAAGC AGCTCAAGAAAAAGCTCATGCTGTACGTGCTGCTGTTATATCTCAGTTCAAGTCCATGCTTCGA GAACAAGGAGATATTACTTTAAATACACGGTGGTCAAAGGTGAAGGATAGCTTAAGAAGTGATC CTCGTTATAAGTCTGTTAAGCATGAAGACAGAGAGACTTTATTCAATGAGTATCTATCGGAACT GAAGGCTGCTGAACAGGAAGTTGCACGAATTGCAAAAGCAAAACACGATGAAGAGGATAAATTG AAGGAAAGAGAACGTGCTTTGCGAAAACGTAAAGAAAGAGAAGAACAAGAAGTGGAGAGGGTGC GGTCGAAAGCTCGTAGAAAAGAAGCTGTTGAATCTTATCAAGCCTTGCTGGTTGAAATAATTAA GGATCCTCAGGCTTCTTGGACAGAGTCAAAACCTAAATTAGAGAAGGATCCCCAAGGACGTGCA GCTAATCCTCATTTGGATCAGTCTGACTTGGAAAAGCTTTTCCGGGAACATGTGAAGGTGTTGT ATGAG
Genomic sequence	GATATCAGCGAGGATACGGATTATCAATCATTCAAAAAGAAATGGAGTCATGATCCACGCTTCG AGTCCTTAGATCGAAAGGAGAGGGAAGTGCTTCTGAATGAGAGGTATTATTCAACTGGTTCAAT CTTGGTTTAAGTTTCAATTACTCTCTGTCGCTTATTTCCTGATATTTTTCTCATCTCAGCCTTA ATAAATGACTTGATATAGATATTTTTTTTGACACACTATTTTTGTACTCTCCTTCCCCTAGTTT AAAAAAACTTGACTTGCGTTCCTCCTTTGTCAAATTCTAGAATACTTAAATCTAACTTGTTAAA TGGACGTTTTTCATAGCATAAACTAATACTACATTATATTATTGTAGTTATTATGCGAGTCCTT AGTAGCTTTAAATGTCCAGACAGCTTAATTTTTCCTGCCATCTTCCACTTGAAGTGCAGAATTT GAAAAAACAGAATCCCATATGAACCATGATATATTACCAAATGCCATGGGAACTCTGGAAGTGT GGAATTGTTGTCCAGGGATTGAGAAAGACATATGTTTTACTAGCACGTACAATTCTCCACAATG TTTCTACCTCTTGATCAAATCTTCAAATCCACTATTGCAATAAACTAGTCCTATGAATCTTCAA GTGCTTGACACCAAGGCCCCCTGAATCCTGTCTAAGGAAACAGTTCCCCACTTCACTGGAATGA AGGATTTCTGTTTTCCATTTCCTTGCCACAAGAAGTTCCTTTTGAAGCTTATCCAACCTCTTGG CCAGTAATACAGGTAAGGAAAGAGGCTCATTGTATAAATAGGTATGGAACCGAACACACTATTG ATCAACGAGAAGAATGAAAGTGATTGACACATGAGTTCCTAGAACTGTAGCATTTAGGTGGCTT TGCCTAGAAGCACAGGCGCTTGTATTGCGCTCCCACAACCCCATTTCACAGTTTAGGCTGCTCC GATTTTGCTCGCCGCTACTACGGGAATCACTTTTGTTTTCTTTTCTCCTGGCTACTAAGATGTT TCAGTTCGCCTGGTTGTCTCTTGCATGCCCATGAATTTTATTTTTGGAAGGGGGTGGGGTGGGT TGGGGGATTTGCACCATCGGTGCGAGTGTTCCACCTTTTTTTAGTTGATGATCTGAGAATTTGT AATGGGTAACATATTCAAAGAGATTTTGACAAGAATAGAACTTTATTTTTGCTTGTGCAAGTTT GTGTTGCAACTATGCTCAGTTGCTGGAGGACTAATCAATGTAGTTAACATTCTCTGATCTTATT CTTTTGCTGGTCTGGATTTGTTTTTCTCCTTTTGGTTCGTGGCAGTTTTAATATGATTTTATGT ATTTCCATTTTTCTTTATAATGATCCGGTTGTTCAGGCAAGATGTATGTACTGTGTAGGGTTCT TCAGCTTAGGAAAGCAGCTCAAGAAAAAGCTCATGCTGTACGTGCTGCTGTTATATCTCAGTTC AAGTCCATGCTTCGAGAACAAGGAGATATTACTTTAAATACACGGTGGTCAAAGGTAGGTTTAT ATGTTGAGATGTTATGATAAGAAAATTTCAGTATGAGTAGTTGTCTTGGAGATATTTTTACTTG CTTGCAAATTGGTTGCTTTCTCTGCATTGGCATCCCTAGTTAAGATTGGAACTTCTGATGTTCC TTGCTTAATTCTGTATATAGTAGTATGTGGCGCCTTCAACTTCTTAGTTTTCTCGAGTTCTGTT ACATTTTCACTTCCTTTTAATTTTCTCAACAAACCTTTCATGTTCTCAATATGGTCGAACACTC CGCATAACTAATGCCATGTTAAACTCCAATTCTCTTTAAATCTACAATGTCATCAAATTTATCA ATAATTTCTTAACTTTGTGAAGTAAAACAAGAAGCCCATTACTTTAAATTAAGTGGCGCAGGTT TATGCTGGGTGGTGCCAAAATAATTGACTTCCCTTAGACAGAATATCTCATCATTTCTTTTGTA TTAAGACAGAATATCTCATCATTTGCTTTATGAAATTATAAGTATAGTGGATCACACTCCGAGA TAATGTTTTTTATCTTAGAAAGTAAAAATAAAGGTAGCATCAACTTGAAAGAAAGGGCGTAGCG GAATAATAGAATTAAAAATCTTGCTCTCTGGAACATCACCATTTTCAAAAAAGAAAATTTTTAA AACCTTGCTTTCTGGAACTAAGATAATAGTCAAAACATCGATCAGTATCCATTTGAATTAGGTG ATGAATATCATGTCTGCGAATCAACAAGAGAAAAATGATTTGTTCTTTGTTTCATTGTTTTATT TTCTCAGGCAGTCCCCTGTCATCTTTTCTTAAAACCAATGGAAGTTATGCTCGGGTTTTCAATA TTCATACGGTTCTTGCAGTTTTGCCCATTTCTTGAAATGCTCATGGGGGACAAAAACTACTTGC CCTTGTTTTGGTTTTGATGAATACTCTATATAAAGTTTAGTTTAAACTTTTCTTTTCCCTCAAG TTATCAGTCCCCTGTCGTCTTTCCTTAAAACCAATGGAAGTTATGCTCGGGATTCCAATATTCG TACGGTTCTTGCAGTTTTGCCCATTTATTGAATTGCTCATGGGGGACAAAAACTACTTGCCCTT GTTTTGGTTTTGATGAATATTCTATATAAAGTTTAGTTTAAATTTTTCTTTTCCCCTAAGTTGC GATTTTCGGTTGATATTAGGTGAAGGATAGCTTAAGAAGTGATCCTCGTTATAAGTCTGTTAAG CATGAAGACAGAGAGACTTTATTCAATGAGTATCTATCGGAACTGAAGGCTGCTGAACAGGAAG TTGCACGAATTGCAAAAGCAAAACACGATGAAGAGGTGAGTTCTTTCCCAACGAATACAACATT ACCATTCTACAAAAATAACTCTTCTCTTTTTCCAATTTTTGGCACCTTCTTTTTCTTTGTTTAA GCATTTCTTCTTTCGACTTGGCTTTTGTTATATTATTTTATGAATATTTATTAGGGTAATCCAA GTTTAATATCATACTATATCATTTTGGGTTTGTGTTCTCTCTCTCTCATATTATGGTCTTCCTT TTTTGGTGGGGGAGTTAGATATCTCTCAACTGTCTTTCTAAAATATGGTTTTTAAATTTTTCCT ATTAACCTGTAACTAGTTATATACTGTAAATCTCAATGTGGAACTTAAGTGTACAGATAACACC TACGATTTGACTCTAACATGCAGTTAGTTCCTTGTCACCTCTCTTATTTACTTATCACGTAACC AGTTACATCGTAAATCTTAATTTGGCACTTAAAACATACAGATAACACCGTTTGGATTGGCTTA AAAGGTAGTTTTTAAAAAGCAAATTTTTAAAGTCAAACTTGAATGACGTATAAGTCAAAAAATA AAAAGTAGGGAGAGTCCTACTTTTGACTTTTAACTTATTTTAAGTTATTTTAAATTTGCCAAAC ACTCCTAAAAGCTAAAAATGACCTAAAAATAAGTTTGACCAACTTCGGAGTGAATCCTACCAGG CTCTTAACATGTGGCTAATTCGTTGTCGCACACCCTAACCCACCCCGTCCTCTCTCTCTCTCTC TCTTTTGAACATGCACACATATTATATATAGGGGTTAGAACTTTTAAGCCGTTTGTAGAGAGGA CGAACACTTAAACCCCTATATTCTTAATTCTCTCTATCTCTCTCTGTCTTATGTTATTTCCCAT GAATCCAAATGCACCTAGTTCCTCGAAGAAAATGCTCGAATCTAATTGGAACCTATCGTTGAAA GAAAATGAATTTGTACCTAACTCAATTTCAAAAGCTAGTTCATCAGAGGTGAGAATTGCTCAAA ACCATATAAGGTGACAACGCATACCTTCGACCAAGATGAAACTCTAACACCTCTTAACACGCGT AGGTCATCTCTTCGGGTAGTTTAATCATATTCATTTGTCTTTATTCAATGGTTGTCTTTCAACT CTGTTGATTCAAGCCACTGTGTTTGTGCCTCCAACTAAGGGCTCTCACTGATTCTCTCTATTAT GTTGATTGTGGTAGACAACAAATAATTGTTGCTTTGTGATTTTAATTAATTTTACTTATTTAAG TTATGTGTGTATTTGGACCGTCAATCTGAAGTTTTGGAAAAATCTGTATGTAGTACATGAGGTT CTAAAGATGTTAATGGCTATCTGCCTGACTTTTTAGGATAAATTGAAGGAAAGAGAACGTGCTT TGCGAAAACGTAAAGAAAGAGAAGAACAAGAAGTGGAGAGGGTGCGGTCGAAAGCTCGTAGAAA AGAAGCTGTTGAATCTTATCAAGCCTTGCTGGTTGAAATAATTAAGGATCCTCAGGTATTATCT TGTATAGACCCCAAAACTGTTGCAAGGAAATATCTTAGAACGTGTGTCATGGATCATATCCCAT CATTTGATTAGACTGTTTGTCTGGATAGTTCAAGAACCTTGAAACAGAACTTCTGCTTCATCCT AATAAGCTCATCAGCTGTTTGCCTGCCTTCATCTTAATTAAGAAACAAAATCCAAAAGAACTTT CTTTGTTGCAAAGTCCATCGATTTTTACACGGTTGGTTTGCCTTCCTAAATTGTGTTGTAAATA GCAATGCTCCTTGGTGCTCATCATTTATGTAGTTATAATTCTTGAGTTTGGGCTTTACAATTGT GTTGTTTACTATGTGGTTAACTGTTGAAAGGTCATTCCGTTTTATTCTCTGGATGTCTATTTTC AATTTTTTGAGATATCCTTCTGCCTTGCACCCAAGGCTTCTTGGACAGAGTCAAAACCTAAATT AGAGAAGGATCCCCAAGGACGTGCAGCTAATCCTCATTTGGATCAGTCTGACTTGGAAAAGCTT TTCCGGGAACATGTGAAGGTGTTGTATGAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.817261354

Conservation Information
Conserved circRNAs	NA
PMCS	0.817261354

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							2373558-2376969(+)
2376969-2372148(+)
						
						Potential amino acid sequence
						
							MLREQGDITLNTRWSKVKDSLRSDPRYKSVKHEDRETLFNEYLSELKAAEQEVARIAKAKHDEE
DKLKERERALRKRKEREEQEVERVRSKARRKEAVESYQALLVEIIKDPQASWTESKPKLEKDPQ
GRAANPHLDQSDLEKLFREHVKVLYEDISEDTDYQSFKKKWSHDPRFESLDRKEREVLLNERVL
QLRKAAQEKAHAVRAAVISQFKSMLREQGDITLNTRWSKVKDSLRSDPRYKSVKHEDRETLFNE
YLSELKAAEQEVARIAKAKHDEEDKLKERERALRKRKEREEQEVERVRSKARRKEAVESYQALL
VEIIKDPQASWTESKPKLEKDPQGRAANPHLDQSDLEKLFREHVKVLYEDISEDTDYQSFKKKW
SHDPRFESLDRKEREVLLNERVLQLRKAAQEKAHAVRAAVISQFKSMLREQGDITLNTRWSKVK
DSLRSDPRYKSVKHEDRETLFNEYLSELKAAEQEVARIAKAKHDEEDKLKERERALRKRKEREE
QEVERVRSKARRKEAVESYQALLVEIIKDPQASWTESKPKLEKDPQGRAANPHLDQSDLEKLFR
EHVKVLYEDISEDTDYQSFKKKWSHDPRFESLDRKEREVLLNERVLQLRKAAQEKAHAVRAAVI
SQFKSMLREQGDITLNTRWSKVKDSLRSDPRYKSVKHEDRETLFNEYLSELKAAEQEVARIAKA
KHDEEDKLKERERALRKRKEREEQEVERVRSKARRKEAVESYQALLVEIIKDPQASWTESKPKL
EKDPQGRAANPHLDQSDLEKLFREHVKVLYE(+)
MRISARIRIINHSKRNGVMIHASSP*(+)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	2373558-2376969(+) 2376969-2372148(+)
Potential amino acid sequence	MLREQGDITLNTRWSKVKDSLRSDPRYKSVKHEDRETLFNEYLSELKAAEQEVARIAKAKHDEE DKLKERERALRKRKEREEQEVERVRSKARRKEAVESYQALLVEIIKDPQASWTESKPKLEKDPQ GRAANPHLDQSDLEKLFREHVKVLYEDISEDTDYQSFKKKWSHDPRFESLDRKEREVLLNERVL QLRKAAQEKAHAVRAAVISQFKSMLREQGDITLNTRWSKVKDSLRSDPRYKSVKHEDRETLFNE YLSELKAAEQEVARIAKAKHDEEDKLKERERALRKRKEREEQEVERVRSKARRKEAVESYQALL VEIIKDPQASWTESKPKLEKDPQGRAANPHLDQSDLEKLFREHVKVLYEDISEDTDYQSFKKKW SHDPRFESLDRKEREVLLNERVLQLRKAAQEKAHAVRAAVISQFKSMLREQGDITLNTRWSKVK DSLRSDPRYKSVKHEDRETLFNEYLSELKAAEQEVARIAKAKHDEEDKLKERERALRKRKEREE QEVERVRSKARRKEAVESYQALLVEIIKDPQASWTESKPKLEKDPQGRAANPHLDQSDLEKLFR EHVKVLYEDISEDTDYQSFKKKWSHDPRFESLDRKEREVLLNERVLQLRKAAQEKAHAVRAAVI SQFKSMLREQGDITLNTRWSKVKDSLRSDPRYKSVKHEDRETLFNEYLSELKAAEQEVARIAKA KHDEEDKLKERERALRKRKEREEQEVERVRSKARRKEAVESYQALLVEIIKDPQASWTESKPKL EKDPQGRAANPHLDQSDLEKLFREHVKVLYE(+) MRISARIRIINHSKRNGVMIHASSP*(+)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Zuo et al., 2016; Tan et al., 2017; Yin et al., 2018; Wang et al., 2018b

circRNA

Detail information of Solyc04g008700.2_circ_g.2

Address

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