Detail information of Zm00001d007311_circ_g.1


General Information
CircRNA Name Zm00001d007311_circ_g.1
ID in PlantcircBase zma_circ_001236
Alias circ540
Organism Zea mays
Position chr2: 227457084-227457282  JBrowse»
Reference genome AGPv4.38
Type   ei-circRNA
Identification method CIRI
Parent gene Zm00001d007311
Parent gene annotation BHLH transcription factor
Parent gene strand -
Alternative splicing NA
Support reads 4
Tissues seedling leaves
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered Zm00001d007311_T003:1
Zm00001d007311_T001:1
Zm00001d007311_T002:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CACCTCCTTCCCCTTGCCGTTCCCGTGCGACCCAGCCTCGTCGCGGGCGGCGTCTGTCGAGAGC
TTGCGTCTCTTGGCCATCGTCTCCGGCTCCCGGGAcccgctcggcgaggctgtggctgtcggtg
gcctggcccctccgcgctcgcacgtggatgtagtccttgggtggctgtggctctggctctgccg
ccggcgc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCCGCTCGGCGAGGCTGTGGCTGTCGGTGGCCTGGCCCCTCCGCGCTCGCACGTGGATGTAGTC
CTTGGGTGGCTGTGGCTCTGGCTCTGCCGCCGGCGCCACCTCCTTCCCCTTGCCGTTCCCGTGC
GACCCAGCCTCGTCGCGGGCGGCGTCTGTCGAGAGCTTGCGTCTCTTGGCCATCGTCTCCGGCT
CCCGGGA
Conservation Information
Conserved circRNAs NA
PMCS 0.330818425
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chen et al., 2017b