Detail information of Zm00001d052453_circ_g.1


General Information
CircRNA Name Zm00001d052453_circ_g.1
ID in PlantcircBase zma_circ_008192
Alias zma_circ_0001628
Organism Zea mays
Position chr4: 190325322-190327890  JBrowse»
Reference genome AGPv4.38
Type   u-circRNA
Identification method find_circ
Parent gene Zm00001d052453
Parent gene annotation RNA-binding (RRM/RBD/RNP motifs) family protein
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues leaf, root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Zm00001d052453_T001:7
Zm00001d052453_T010:7
Zm00001d052453_T012:7
Zm00001d052453_T011:7
Zm00001d052453_T007:7
Zm00001d052453_T008:7
Zm00001d052453_T004:7
Zm00001d052453_T013:5
Zm00001d052453_T009:7
Zm00001d052453_T005:7
Zm00001d052453_T002:7
Zm00001d052453_T014:7
Zm00001d052453_T006:7
Zm00001d052453_T003:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CATCAATTGCACATGTGCAGCCAATGTTGTATGCTCCAGGTGCTTCTCCAGGTTCAACAATGAT
CCCAATGGTCCTACCAGACGGCCGTCTTGTATACGTtttccttggaactttgagctttggaaga
tgccaaggagaacaggaaatgctgcttcgaccaaatcagttgaattggtcaaacaagaccaaat
ggagtttg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TTTCCTTGGAACTTTGAGCTTTGGAAGATGCCAAGGAGAACAGGAAATGCTGCTTCGACCAAAT
CAGTTGAATTGGTCAAACAAGACCAAATGGAGTTTGATCATCCTGATGAGGTAGATGAAGAGGA
AGAAGTTGAGTATGAAGAAATTGAGGAGGAGGTTGAGTATGAAGAGGTAGAGGTAGAGGAGGAG
GAGGAGGAGGAGGAGGAGGATGAAATTGAAGGTGTGCGTGAAGTTGATGCTAATCATGACAGTA
AAATAGTGGATGATGATCCCAAGGATGGGAATGAAAAAGAAAAGCATGCTGAGCTTCTTGCTCT
TCCTCCTCATGGAGCTGAAGTTTATGTTGGGGGGCTTTCCTCTGATGTATCTTCTGAAGATCTC
AAACAACTATTTGAATCTGTTGGAGAAGTTGCAGAAGTGAGTACTGCCTACTTTCTCTGGTTTA
GCTTTTGTATTTCTTAGATTTTGCAATTCAGAGTCCTTTTTTCCTGCAGGTGCGAATGCGAGGA
AAGGGGGATAACAAGACATATGCTTTTATTAATTTCAGAACTAAAGAGATGGCTTTAAAGGCCA
TCCAAAAGTTGAGCAATAAAGACCTAAAGGTTTGTTTACACAATTTCACTTTAAGTCTAGAGTT
GATCTTCATGTTATTCCATACCAGTGGTTTATTGCGTTTGTTTATATTATTTTTTACAAAAAAG
ATAGAAAAAGTTTTTGATACAACAAACTGAGTTGAAAATTGTGTTTTTGATACAACAAACTTCC
CAAGATAGAAAAAGGAATCTGAGTTGAAAATTGTGTTTTTATATATTTTATGTTTAGGTCTGTG
GAGGATCAATTTTAGATGTAGCGAAGTTCAATTATATATGATTGCACTCAGATCCTCTTGCTAA
TTTCTAAAAAGATTTGCAGCACTTCCACTGTTGAATTTAATTGAATTTAAAACATAGGGCCTTG
GGACCAGTTTGAGAAGTAGCAAAGTACGAGGCTATATACTTTGTACTTAGTACTTACATCCTCT
TGCTATTTTAAAAATAAATTGCAGCAGTTCCACTGCCAAATTTGATATACAAAACCTTGTGACT
ATTGCAAACCAGTGTGTTCAGATATGCTTCCAGAAACCTGAACTGTGGGTGGTGGAAGATTATG
TTTTCGGTTATCAAGGGATCTATCTAAAATATTTGCGAGTCTGTTTTAGCTAACCCCTAAACAC
CTTCAGTGTTGTCGTTCATATTATCCAGTAGTCTTGCAACCCAAGAACATGAATACATGCTAGT
ACTTCCTGATTCTTTGTTACACCTGATTAACTCGTATATCTTGTACTTTCATACTAACTAAACC
CTGTTATTATGGTTCTTATTACAGGGAAAAAAGATAAAAGTTTCATCCTCTCAGGCTAAGAATA
GGCTTTTTATTGGGAATGTACCCCATGATTGGACACCTGATGATTTCAAAACCGCAGTGGAAGA
AGTTGGTCCTGGAGTTTTAAAAGTTGATCTCATGAAGGTATGAATAGATACTTGGATTGCTCAA
CAACTTCAGTGTGCATCATTAAAGTTTTTTTACTCTCAAATATATTTAGGCACCAGGCTCAGGT
CGCAATAAGGGTTATGGCTTTATTGAATACTACAACCAGGCATGTGCAGAGTATGCTAAGCAGA
AGATGTCTACTCCAGAATTCAAACTAGATACAAATGCTCCTACTGTCAGCTGGGCAGATCATAA
GAATGCTAGTGAAGCTACATCTACTTCACAGGTTCCTTTGAGCACTACATGATGCAACGTTACC
TCTTATGTTTCTTTTATTATGTTATTTTATAAGGATGTATATTTGTCTATAGGTTAAATCTCTA
TATGTCAAAAACCTCCCCAAGACTGTTACTCAAGAGCAGCTGAAAAAGCTGTTTGAGCATGTTG
GAGAAATCACAAAAGTTGTTATTCCACCTGCAAAATCTGGGCATGAAAATCGGTACGGTTTTGT
TCATTTTAAGGAACGGTCCATGGTTATGAAGGCTCTGAAGAACACTGAGAGATATGAACTTGAT
GGTGAGTTTCCTTCTCTAACATCTTTATGTAGCTAGTCAATTTTTCTAACAGTCTTTATGTCTA
AAAGTTTTTTTTTCTTTTTTTTTGCCACTAACAGGTCAGCTGCTGGATTGTTCACCTGCGAAAC
CTCCTGCTGATAAGAAGGATGATACTGGATCATCTCCTACTGCAAAAGGACGTCCATTACCCCC
AAGTTATGCCCCACTTGGATATGGACTAGCGGGAGCTTATAATCCACTTGGAAAAGGACTGGCA
GGTGCTTACAATTCCCCTGGAAACGGACTGGCAGGTGCTTATGGCGTGCTTTCTGCTCATGCCG
CACAGGTACATGACATGTTCTGATATGCACTGGCACTGGCCAATGCAGGGGGAGAAACATTTAC
AATAGGTGATGTCCTTCTAACTGTTGTGCATTTTTGGCATCAATTGCACATGTGCAGCCAATGT
TGTATGCTCCAGGTGCTTCTCCAGGTTCAACAATGATCCCAATGGTCCTACCAGACGGCCGTCT
TGTATACGT
Conservation Information
Conserved circRNAs NA
PMCS 0.167016919
Functional Information
Coding potential Y
Potential coding position 190325350-190325436(+)
Potential amino acid sequence MPRRTGNAASTKSVELVKQDQMEFDHPDEVDEEEEVEYEEIEEEVEYEEVEVEEEEEEEEEDEI
EGVREVDANHDSKIVDDDPKDGNEKEKHAELLALPPHGAEVYVGGLSSDVSSEDLKQLFESVGE
VAEVRMRGKGDNKTYAFINFRTKEMALKAIQKLSNKDLKGKKIKVSSSQAKNRLFIGNVPHDWT
PDDFKTAVEEVGPGVLKVDLMKAPGSGRNKGYGFIEYYNQACAEYAKQKMSTPEFKLDTNAPTV
SWADHKNASEATSTSQVKSLYVKNLPKTVTQEQLKKLFEHVGEITKVVIPPAKSGHENRYGFVH
FKERSMVMKALKNTERYELDGQLLDCSPAKPPADKKDDTGSSPTAKGRPLPPSYAPLGYGLAGA
YNPLGKGLAGAYNSPGNGLAGAYGVLSAHAAQPMLYAPGASPGSTMIPMVLPDGRLVYVFLGTL
SFGRCQGEQEMLLRPNQLNWSNKTKWSLIILMR*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ma et al., 2021b