Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d052453_circ_g.1 |
ID in PlantcircBase | zma_circ_008192 |
Alias | zma_circ_0001628 |
Organism | Zea mays |
Position | chr4: 190325322-190327890 JBrowse» |
Reference genome | AGPv4.38 |
Type | u-circRNA |
Identification method | find_circ |
Parent gene | Zm00001d052453 |
Parent gene annotation |
RNA-binding (RRM/RBD/RNP motifs) family protein |
Parent gene strand | + |
Alternative splicing | NA |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Zm00001d052453_T001:7 Zm00001d052453_T010:7 Zm00001d052453_T012:7 Zm00001d052453_T011:7 Zm00001d052453_T007:7 Zm00001d052453_T008:7 Zm00001d052453_T004:7 Zm00001d052453_T013:5 Zm00001d052453_T009:7 Zm00001d052453_T005:7 Zm00001d052453_T002:7 Zm00001d052453_T014:7 Zm00001d052453_T006:7 Zm00001d052453_T003:7 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.167016919 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
190325350-190325436(+) |
Potential amino acid sequence |
MPRRTGNAASTKSVELVKQDQMEFDHPDEVDEEEEVEYEEIEEEVEYEEVEVEEEEEEEEEDEI EGVREVDANHDSKIVDDDPKDGNEKEKHAELLALPPHGAEVYVGGLSSDVSSEDLKQLFESVGE VAEVRMRGKGDNKTYAFINFRTKEMALKAIQKLSNKDLKGKKIKVSSSQAKNRLFIGNVPHDWT PDDFKTAVEEVGPGVLKVDLMKAPGSGRNKGYGFIEYYNQACAEYAKQKMSTPEFKLDTNAPTV SWADHKNASEATSTSQVKSLYVKNLPKTVTQEQLKKLFEHVGEITKVVIPPAKSGHENRYGFVH FKERSMVMKALKNTERYELDGQLLDCSPAKPPADKKDDTGSSPTAKGRPLPPSYAPLGYGLAGA YNPLGKGLAGAYNSPGNGLAGAYGVLSAHAAQPMLYAPGASPGSTMIPMVLPDGRLVYVFLGTL SFGRCQGEQEMLLRPNQLNWSNKTKWSLIILMR*(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ma et al., 2021b |