Detail information of Os08g0494400_circ_g.1


General Information
CircRNA Name Os08g0494400_circ_g.1
ID in PlantcircBase osa_circ_037481
Alias Os_ciR4118
Organism Oryza sativa
Position chr8: 24408121-24411213  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method CIRCexplorer, find_circ
Parent gene Os08g0494400
Parent gene annotation Conserved hypothetical protein. (Os08t0494400-01)
Parent gene strand +
Alternative splicing Os08g0494400_circ_g.2 Os08g0494400_circ_ag.1 Os08g0494400_circ_g.2 Os08g0494400_circ_igg.1 Os08g0494400_circ_ag.2
Support reads 2/1
Tissues root/root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os08t0494400-01:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGTGACAATCTGTTCTTTGTGGAAGTCAAATGTATGGGAAAAGGAAATTATGAAGAAATGGTGG
TCAGCTGTTTCTGCGTGATTAATCCTATTGATAATGatatcaggaggaggaacatgtggttgag
actgcatctgcaaaagcgcgcgccgatccgctgtatgaccaccgcagtccttctcccttatcat
tctttttg
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 1035
Transcript exons: 24408121-24408180,24409519-24409818,24410539-24411213
ATATCAGGAGGAGGAACATGTGGTTGAGACTGCATCTGCAAAAGCGCGCGCCGATCCGCTGTAT
GCAAAGGAGGGGCATGTGCCATCTTACATCGCTGCTACTTCCTCATCCTGTCAGCAAGCAGATG
CAGTAGCTCAGGACACCGAGGTCTTGCCACCATCAGGAAGCTGCCTTTCCTCATCTCCGGCATC
ACACGTCTGGGCCCGACATGTGAAAGATTGGGGACTCATATTTTACATCAGGGTTGATCTTCAG
GGATCTTTCCACACATATCCTGATGTGGGTGGGCCATTTCAAAGCTCACAGGAAGCTGACAAGG
CTATTGATCGCTATCTTGAGGACCATCGGGATCCAAAAATGCACATAGGGCAAAATGATGATAT
CTCTTCAATGGAGAATGTTATACGGCGATGCCTTTACTGGCCTGATGGCACAATTAAGAGGCGT
ACAAAATCATTTGCGACTTGGGAAGCCAAAAAGAGAATGCACCAATTCATCCAAGCATTAGTGG
ACAAGTATAATGATGATCACAATCTTTTGGGGGTTTGCTTTCTCTCTATCTCATTCTCTGTCCT
TCTGCCTTGGTTGCACTGTCTTATTTATCTTATTATGTACTCCCTCCGTTTCATATTATAAGAC
TTTCTAGTATTGCCCACATTCATACATATGTTAATGAATCTATACACTTATGAATCTATACACT
TATATGTCTAGATTCGTTAACATCTATAAGAATGTGGATAATGCTAGAAAGTCTTATAATATGA
AACGGAGGAAGTAGGATTGCCTATCTGATCCATCCTTTTTATTTTAGGATTTGGCACTTAAACT
CAAAGACGTTTTGCACTACCAACCACTTTGTGAGAACCATATGTGGTACTATCATCTCAATTTC
ACTGCAAAGACTAAAGAAGATGATGGTTTCGACTCTACTAGTGACAATCTGTTCTTTGTGGAAG
TCAAATGTATGGGAAAAGGAAATTATGAAGAAATGGTGGTCAGCTGTTTCTGCGTGATTAATCC
TATTGATAATG

Genomic sequence ATATCAGGAGGAGGAACATGTGGTTGAGACTGCATCTGCAAAAGCGCGCGCCGATCCGCTGTAT
GACCACCGCAGTCCTTCTCCCTTATCATTCTTTTTGTGTTGCTGATCTAGTCCAAGGGTATACT
TAGGTCTTTTTCTGTTGCTGATCTAGTCGAAGGTTATACATAGGCCAAATGGTTATGAAGGGTC
TTGCTTACTTGATTTGGATTCTTGGATGGTTAGGGAGAGAGGGCTTACTTGATTTTGATTCTTG
GATGGTTAGGGAGAGAGGGCTATCGTATTGATCTCTATGTATTTCAGTCCGATATAGTTACCAG
AAGATTTTTTTGTCCTACACCATTTTTTCTGTACAAAGCTAGGAAATTCTTTTTCTTTTCCTCG
TGGGGCTCTATCAATCCAACTTCGAATTATGAATGCATTTTCTACATTCCTCAACACTGTTTTT
TTCATTAATAATGAATGTTACTCCCTCCGTCCCATTTACAGGGTGTGATATTTTTTTTATATAA
GACCAAGAAAACTGGTCGTGAGGAAAACAAATACTCTCTTACCCCTAATAAATCGCAAGCATGC
AACAATTGATTCATGGCATGCATGCAAAAATTCTGTTGGTAATGCATATTTGATTTGCGCAACT
AATTAGTTCTTCCCATCTTCCCAAAGCATTCAACGGTGAGTGCAAAAGGATAAGATCGTGCACC
CTCTGTTTTGGGACGGCATAGAAAAAAAATGTGCGCCCTCTAATCTGCGATGGAGGGAGTACAA
GTGACAACTGTTATCACTAGTTTTTCTATACTCTGATTATGGTGGTTTGCTGTTTCTCAGTCTG
ATCCAAATCATGGATTTAGCTTCAATTTGTAGGAACTGCTTTTATGAATTTATAGTTATGCATG
ATCTATCATGATGACATGTTGCATGCCAAATTGAAATGACACCATAACAGTTAGGCATGAAAAA
TTTATTTTGACACTGTAAATTGTGTATTGGGTAAGTGTGATGTTCTGCATTGCAGCCTATTAGT
TAGTTTGTATAATATTCCCGCTGTGGATTAGCCACTTATGTTCTTCTCAAATATGGTAATAGGC
CAGTAAGAATACCAGAGATATGAAACTGACAAAATGGTCATTGAATGGACAGCTGGCATCTATG
AGCCTATTTATGTTTTCTGTGCCTTTTAGTATGCTTTCTTGTTGACAAACCTGATTCATAGGCT
TTTAACTGTGCCAAAAAAATATGACTTTATGCCTGCGAAATGTGTGGCAAAATATTTCCTATTT
TAGATAGATAGTTCCTTCAACTGTCATCTCACCGTGGTAATATGCCTATGGTTTTTATGTCTCC
TAAGATAATAATAAATTCTTCTTCTACTCATTTAGCTTGCTTGTTCCATATCAGGTATGCAAAG
GAGGGGCATGTGCCATCTTACATCGCTGCTACTTCCTCATCCTGTCAGCAAGCAGATGCAGTAG
CTCAGGACACCGAGGTCTTGCCACCATCAGGAAGCTGCCTTTCCTCATCTCCGGCATCACACGT
CTGGGCCCGACATGTGAAAGATTGGGGACTCATATTTTACATCAGGGTTGATCTTCAGGGATCT
TTCCACACATATCCTGATGTGGGTGGGCCATTTCAAAGCTCACAGGAAGCTGACAAGGCTATTG
ATCGCTATCTTGAGGACCATCGGGATCCAAAAATGTAAAGTTCCTCGACTGCTATTTAGATTTT
TATTATTTCATTTCTTTTGTTTGATGTGTATGCTTGCAGCTGATTATATTCAAACAAGGATACA
TGGCTGATGCTATAATAGTATAGGTGATGGAACATAATGCAGTTTTAAAAGTATGAATCATGAT
AACGACGAATGGCCTTTAGTTAAACTACATATAAATTGACACATTGATTAGAAGAAATACAAGC
ATATGTTAGTTTTTAAAATTCTTGTTTTGAGAGTAATTAAAGTTAATGGAAAATTTTATAACTG
TATTTCTGTGGGAGTTGCTGAAATAGCACAAGTCATTAGCATAGCTGAGAATTATGAAGTGCAT
ATAGATGTTATGAGACCACTTTGTATGTAGCTATATTTTTCTTTTAATTGTAATTTATATGATT
GGTTAGCCTTTCCTCAGCAGTAAAGAAAAAAAAGATTTCCTAACAATAGGTTCCAAATGAGCTT
GGGGTCTAGAATAACAGAAGGGATATCTTAAAAAATGCCTTGGGAACAGGCTTGTAAACAGTCA
TTTCATTCTTTTGTTTCGGTTTCTGTTACCACCTTAATCTATTTTAGAGGGTCACTTGGGAGCT
TTTGATGCAAGCTAGGACTGATAACATTGAATGAGTTCTTGGTATTATTTTGTGTTCTCCATTT
TTTAGGAAGTACAATCCACTAATCGTATCGGATGCTCTGATTTAAACTAGGCACATAGGGCAAA
ATGATGATATCTCTTCAATGGAGAATGTTATACGGCGATGCCTTTACTGGCCTGATGGCACAAT
TAAGAGGCGTACAAAATCATTTGCGACTTGGGAAGCCAAAAAGAGAATGCACCAATTCATCCAA
GCATTAGTGGACAAGTATAATGATGATCACAATCTTTTGGGGGTTTGCTTTCTCTCTATCTCAT
TCTCTGTCCTTCTGCCTTGGTTGCACTGTCTTATTTATCTTATTATGTACTCCCTCCGTTTCAT
ATTATAAGACTTTCTAGTATTGCCCACATTCATACATATGTTAATGAATCTATACACTTATGAA
TCTATACACTTATATGTCTAGATTCGTTAACATCTATAAGAATGTGGATAATGCTAGAAAGTCT
TATAATATGAAACGGAGGAAGTAGGATTGCCTATCTGATCCATCCTTTTTATTTTAGGATTTGG
CACTTAAACTCAAAGACGTTTTGCACTACCAACCACTTTGTGAGAACCATATGTGGTACTATCA
TCTCAATTTCACTGCAAAGACTAAAGAAGATGATGGTTTCGACTCTACTAGTGACAATCTGTTC
TTTGTGGAAGTCAAATGTATGGGAAAAGGAAATTATGAAGAAATGGTGGTCAGCTGTTTCTGCG
TGATTAATCCTATTGATAATG
Conservation Information
Conserved circRNAs osi_circ_018018
PMCS 0.20707653
Functional Information
Coding potential Y
Potential coding position 24411052-24409589(+)
24409546-24410987(-)
24409539-24411163(-)
Potential amino acid sequence MWYYHLNFTAKTKEDDGFDSTSDNLFFVEVKCMGKGNYEEMVVSCFCVINPIDNDIRRRNMWLR
LHLQKRAPIRCMQRRGMCHLTSLLLPHPVSKQMQ*(+)
MAHAPPLHTADRRALLQMQSQPHVPPPDIIINRINHAETADHHFFIISFSHTFDFHKEQIVTSR
VETIIFFSLCSEIEMIVPHMVLTKWLVVQNVFEFKCQILK*(-)
MPLLCIQRIGARFCRCSLNHMFLLLISLSIGLITQKQLTTISS*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017