Plant Circular RNA Database

Detail information of Os06g0609700_circ_g.2

			
						 General Information
					
						CircRNA Name
						Os06g0609700_circ_g.2
					
						ID in PlantcircBase
						osa_circ_031344
					
						Alias
						Os_ciR1244
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr6: 24278312-24279734  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer, find_circ
					
						Parent gene
						
							Os06g0609700						
					
						Parent gene annotation
						
							Esterase/lipase/thioesterase domain containing protein. (Os06t06
09700-01)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os06g0609700_circ_g.1 Os06g0609700_circ_g.3 Os06g0609700_circ_g.4 Os06g0609700_circ_g.5 Os06g0609700_circ_g.6 Os06g0609700_circ_g.7 Os06g0609700_circ_g.8 Os06g0609700_circ_g.9 						
					
						Support reads
						15/1
					
						Tissues
						root/root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os06t0609775-00:6
Os06t0609700-01:7
Os06t0609775-00:6

General Information
CircRNA Name	Os06g0609700_circ_g.2
ID in PlantcircBase	osa_circ_031344
Alias	Os_ciR1244
Organism	Oryza sativa
Position	chr6: 24278312-24279734 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer, find_circ
Parent gene	Os06g0609700
Parent gene annotation	Esterase/lipase/thioesterase domain containing protein. (Os06t06 09700-01)
Parent gene strand	-
Alternative splicing	Os06g0609700_circ_g.1 Os06g0609700_circ_g.3 Os06g0609700_circ_g.4 Os06g0609700_circ_g.5 Os06g0609700_circ_g.6 Os06g0609700_circ_g.7 Os06g0609700_circ_g.8 Os06g0609700_circ_g.9
Support reads	15/1
Tissues	root/root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os06t0609775-00:6 Os06t0609700-01:7 Os06t0609775-00:6

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							GGTAATTTAGAAAGCACACCTGAACAACATCAAGATCCATTATATCAAACTTAGCTCTTCTTTG
AATTACACGGCGCATGTACTGCACAGCCATCTTAACcttatgcttatgactaggaatttcaggg
cgctcgcctagggatgatccatcactcgctgcccccaaggaagaacatcttccccagctctctc
ggtttgaa

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 738
Transcript exons: 24278312-24278455,24278710-24278778,24278849-24278919,24
279009-24279096,24279174-24279359,24279457-24279555,2427
9654-24279734
CTTATGCTTATGACTAGGAATTTCAGGGCGCTCGCCTAGGGATGATCCATCACTCGCTGCCCCC
AAGGAAGAACATCTTCCCCAGCTCTCTCGGTTTGAACTTGTGTATGAGCAGCACTCCTCATTTT
GCCTGTGAGATTTATCCTCTAAATGAGACTCAGCAGTGTGAGTGTCCATCTCAGTGAGGTTATG
ATTTTCATCCAAAAGAAAATCCAAGTCATTATCTGTTTTAATAGACAACTGATTGACCCTCTCT
GTCAGCAATTCAACCACTGATTTTGTAGCATTTGTGAAGTTAGCTGCAGCTGCCGATGAACTGC
CTGCATCAGGACCAGCAGCCCTTAGACCATTGATGATTTCATACAGTAAGCTCTCATTTGTTCC
AGCTCCAACCTTAAAAGCACCAAGGTTGTAGTACTTATCTAACTTATTTGAGCATACTGAAGGA
AACTGAGGTGGGTGTAGAACATTATAGAAGAATATTGAAACAGAATCATAATAAAATTGAGGCC
TGGGGGAATTGTGATCGCCATCAAATTTGATTAAGTTTTTGTCCCCCGCATATGCCTGATGAAT
ACGGTCCGTGTGATGGGGCTGAATAAACATGTCATTTGATGCATGTCCAAATAATGCAGGAATA
AATGTCTTGGGGGCAAACTGAACAACATCAAGATCCATTATATCAAACTTAGCTCTTCTTTGAA
TTACACGGCGCATGTACTGCACAGCCATCTTAAC
						
					

						Genomic sequence
						
							CTTATGCTTATGACTAGGAATTTCAGGGCGCTCGCCTAGGGATGATCCATCACTCGCTGCCCCC
AAGGAAGAACATCTTCCCCAGCTCTCTCGGTTTGAACTTGTGTATGAGCAGCACTCCTCATTTT
GCCTGTGAGATTTATCCTACAAAAGGAAGTAATACTTTGTATCAGTGAGATAGCAAAACAGTTC
TATGTAATATTCTGTACTCAGGGAACAATCAAATGTAGCAGAGCAACAAAATATGCTTTTGGTG
TTTTGTAGGAACAACAAACATATGGTAATCCACATTAAGGGAACTATACCATATGTTGATGTAA
AGATGTTTACAGAACACAGTGTTAAATTACAATGCAAAAAAAAACTATTTTATGCTTCAAAATC
CTCATTTATTTTACCTCTAAATGAGACTCAGCAGTGTGAGTGTCCATCTCAGTGAGGTTATGAT
TTTCATCCAAAAGAAAATCCTGCATTCAGATGGAGATACTCAGCTAAGATCTCAAGTACTTGAG
GCAAACCAACCACTGATGAACTTACCAAGTCATTATCTGTTTTAATAGACAACTGATTGACCCT
CTCTGTCAGCAATTCAACCACTGATTTTGTAGCTAACAAAATGAAAAAGGAATTGACTTAGGGA
TCACAATGATAATTCATGATATCAATTTAATAACCTACTAAGGGAACTGACTCACACCATTTGT
GAAGTTAGCTGCAGCTGCCGATGAACTGCCTGCATCAGGACCAGCAGCCCTTAGACCATTGATG
ATTTCATACAGTAAGCTCTGAAAAATACAAGCAAATTGGTTGGTAATTTCCTCAAAATTTCTGA
TAATATAGGCATTAAAAAAAGGATAATCACCTCATTTGTTCCAGCTCCAACCTTAAAAGCACCA
AGGTTGTAGTACTTATCTAACTTATTTGAGCATACTGAAGGAAACTGAGGTGGGTGTAGAACAT
TATAGAAGAATATTGAAACAGAATCATAATAAAATTGAGGCCTGGGGGAATTGTGATCGCCATC
AAATTTGATTAAGTTTTTGTCCCCCTGTAGACAAATACACCAAGAAAATGAGTTATAAATGTAT
TTAGCATGCATCCATTAACTGTTCAGCCTTTGTAAAGCAAGCAAGAGTTAGACTTACCGCATAT
GCCTGATGAATACGGTCCGTGTGATGGGGCTGAATAAACATGTCATTTGATGCATGTCCAAATA
ATGCAGGAATAAATGTCTTGGGGGCAAACTGTTGTAAAATAAGGAGACAGAAGAGGTGATTAGG
CAAACACCAATGTTAGCTTTGATTTCCATTGAAACTGACAAATGGTAATTTAGAAAGCACACCT
GAACAACATCAAGATCCATTATATCAAACTTAGCTCTTCTTTGAATTACACGGCGCATGTACTG
CACAGCCATCTTAAC
						
					

			
		

Sequences
Splice junction sequence	GGTAATTTAGAAAGCACACCTGAACAACATCAAGATCCATTATATCAAACTTAGCTCTTCTTTG AATTACACGGCGCATGTACTGCACAGCCATCTTAACcttatgcttatgactaggaatttcaggg cgctcgcctagggatgatccatcactcgctgcccccaaggaagaacatcttccccagctctctc ggtttgaa
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 738 Transcript exons: 24278312-24278455,24278710-24278778,24278849-24278919,24 279009-24279096,24279174-24279359,24279457-24279555,2427 9654-24279734 CTTATGCTTATGACTAGGAATTTCAGGGCGCTCGCCTAGGGATGATCCATCACTCGCTGCCCCC AAGGAAGAACATCTTCCCCAGCTCTCTCGGTTTGAACTTGTGTATGAGCAGCACTCCTCATTTT GCCTGTGAGATTTATCCTCTAAATGAGACTCAGCAGTGTGAGTGTCCATCTCAGTGAGGTTATG ATTTTCATCCAAAAGAAAATCCAAGTCATTATCTGTTTTAATAGACAACTGATTGACCCTCTCT GTCAGCAATTCAACCACTGATTTTGTAGCATTTGTGAAGTTAGCTGCAGCTGCCGATGAACTGC CTGCATCAGGACCAGCAGCCCTTAGACCATTGATGATTTCATACAGTAAGCTCTCATTTGTTCC AGCTCCAACCTTAAAAGCACCAAGGTTGTAGTACTTATCTAACTTATTTGAGCATACTGAAGGA AACTGAGGTGGGTGTAGAACATTATAGAAGAATATTGAAACAGAATCATAATAAAATTGAGGCC TGGGGGAATTGTGATCGCCATCAAATTTGATTAAGTTTTTGTCCCCCGCATATGCCTGATGAAT ACGGTCCGTGTGATGGGGCTGAATAAACATGTCATTTGATGCATGTCCAAATAATGCAGGAATA AATGTCTTGGGGGCAAACTGAACAACATCAAGATCCATTATATCAAACTTAGCTCTTCTTTGAA TTACACGGCGCATGTACTGCACAGCCATCTTAAC
Genomic sequence	CTTATGCTTATGACTAGGAATTTCAGGGCGCTCGCCTAGGGATGATCCATCACTCGCTGCCCCC AAGGAAGAACATCTTCCCCAGCTCTCTCGGTTTGAACTTGTGTATGAGCAGCACTCCTCATTTT GCCTGTGAGATTTATCCTACAAAAGGAAGTAATACTTTGTATCAGTGAGATAGCAAAACAGTTC TATGTAATATTCTGTACTCAGGGAACAATCAAATGTAGCAGAGCAACAAAATATGCTTTTGGTG TTTTGTAGGAACAACAAACATATGGTAATCCACATTAAGGGAACTATACCATATGTTGATGTAA AGATGTTTACAGAACACAGTGTTAAATTACAATGCAAAAAAAAACTATTTTATGCTTCAAAATC CTCATTTATTTTACCTCTAAATGAGACTCAGCAGTGTGAGTGTCCATCTCAGTGAGGTTATGAT TTTCATCCAAAAGAAAATCCTGCATTCAGATGGAGATACTCAGCTAAGATCTCAAGTACTTGAG GCAAACCAACCACTGATGAACTTACCAAGTCATTATCTGTTTTAATAGACAACTGATTGACCCT CTCTGTCAGCAATTCAACCACTGATTTTGTAGCTAACAAAATGAAAAAGGAATTGACTTAGGGA TCACAATGATAATTCATGATATCAATTTAATAACCTACTAAGGGAACTGACTCACACCATTTGT GAAGTTAGCTGCAGCTGCCGATGAACTGCCTGCATCAGGACCAGCAGCCCTTAGACCATTGATG ATTTCATACAGTAAGCTCTGAAAAATACAAGCAAATTGGTTGGTAATTTCCTCAAAATTTCTGA TAATATAGGCATTAAAAAAAGGATAATCACCTCATTTGTTCCAGCTCCAACCTTAAAAGCACCA AGGTTGTAGTACTTATCTAACTTATTTGAGCATACTGAAGGAAACTGAGGTGGGTGTAGAACAT TATAGAAGAATATTGAAACAGAATCATAATAAAATTGAGGCCTGGGGGAATTGTGATCGCCATC AAATTTGATTAAGTTTTTGTCCCCCTGTAGACAAATACACCAAGAAAATGAGTTATAAATGTAT TTAGCATGCATCCATTAACTGTTCAGCCTTTGTAAAGCAAGCAAGAGTTAGACTTACCGCATAT GCCTGATGAATACGGTCCGTGTGATGGGGCTGAATAAACATGTCATTTGATGCATGTCCAAATA ATGCAGGAATAAATGTCTTGGGGGCAAACTGTTGTAAAATAAGGAGACAGAAGAGGTGATTAGG CAAACACCAATGTTAGCTTTGATTTCCATTGAAACTGACAAATGGTAATTTAGAAAGCACACCT GAACAACATCAAGATCCATTATATCAAACTTAGCTCTTCTTTGAATTACACGGCGCATGTACTG CACAGCCATCTTAAC

			
						 Conservation Information
					
						Conserved circRNAs
						
							osi_circ_016411 						
					
						PMCS
						0.295543125

Conservation Information
Conserved circRNAs	osi_circ_016411
PMCS	0.295543125

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							24279730-24278314(-)
						
						Potential amino acid sequence
						
							MAVQYMRRVIQRRAKFDIMDLDVVQFAPKTFIPALFGHASNDMFIQPHHTDRIHQAYAGDKNLI
KFDGDHNSPRPQFYYDSVSIFFYNVLHPPQFPSVCSNKLDKYYNLGAFKVGAGTNESLLYEIIN
GLRAAGPDAGSSSAAAANFTNATKSVVELLTERVNQLSIKTDNDLDFLLDENHNLTEMDTHTAE
SHLEDKSHRQNEECCSYTSSNRESWGRCSSLGAASDGSSLGERPEIPSHKHKVKMAVQYMRRVI
QRRAKFDIMDLDVVQFAPKTFIPALFGHASNDMFIQPHHTDRIHQAYAGDKNLIKFDGDHNSPR
PQFYYDSVSIFFYNVLHPPQFPSVCSNKLDKYYNLGAFKVGAGTNESLLYEIINGLRAAGPDAG
SSSAAAANFTNATKSVVELLTERVNQLSIKTDNDLDFLLDENHNLTEMDTHTAESHLEDKSHRQ
NEECCSYTSSNRESWGRCSSLGAASDGSSLGERPEIPSHKHKVKMAVQYMRRVIQRRAKFDIMD
LDVVQFAPKTFIPALFGHASNDMFIQPHHTDRIHQAYAGDKNLIKFDGDHNSPRPQFYYDSVSI
FFYNVLHPPQFPSVCSNKLDKYYNLGAFKVGAGTNESLLYEIINGLRAAGPDAGSSSAAAANFT
NATKSVVELLTERVNQLSIKTDNDLDFLLDENHNLTEMDTHTAESHLEDKSHRQNEECCSYTSS
NRESWGRCSSLGAASDGSSLGERPEIPSHKHKVKMAVQYMRRVIQRRAKFDIMDLDVVQFAPKT
FIPALFGHASNDMFIQPHHTDRIHQAYAGDKNLIKFDGDHNSPRPQFYYDSVSIFFYNVLHPPQ
FPSVCSNKLDKYYNLGAFKVGAGTNESLLYEIINGLRAAGPDAGSSSAAAANFTNATKSVVELL
TERVNQLSIKTDNDLDFLLDENHNLTEMDTHTAESHLEDKSHRQNEECCSYTSSNRESWGRCSS
LGAASDGSSLGERPEIPSHKHK(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	24279730-24278314(-)
Potential amino acid sequence	MAVQYMRRVIQRRAKFDIMDLDVVQFAPKTFIPALFGHASNDMFIQPHHTDRIHQAYAGDKNLI KFDGDHNSPRPQFYYDSVSIFFYNVLHPPQFPSVCSNKLDKYYNLGAFKVGAGTNESLLYEIIN GLRAAGPDAGSSSAAAANFTNATKSVVELLTERVNQLSIKTDNDLDFLLDENHNLTEMDTHTAE SHLEDKSHRQNEECCSYTSSNRESWGRCSSLGAASDGSSLGERPEIPSHKHKVKMAVQYMRRVI QRRAKFDIMDLDVVQFAPKTFIPALFGHASNDMFIQPHHTDRIHQAYAGDKNLIKFDGDHNSPR PQFYYDSVSIFFYNVLHPPQFPSVCSNKLDKYYNLGAFKVGAGTNESLLYEIINGLRAAGPDAG SSSAAAANFTNATKSVVELLTERVNQLSIKTDNDLDFLLDENHNLTEMDTHTAESHLEDKSHRQ NEECCSYTSSNRESWGRCSSLGAASDGSSLGERPEIPSHKHKVKMAVQYMRRVIQRRAKFDIMD LDVVQFAPKTFIPALFGHASNDMFIQPHHTDRIHQAYAGDKNLIKFDGDHNSPRPQFYYDSVSI FFYNVLHPPQFPSVCSNKLDKYYNLGAFKVGAGTNESLLYEIINGLRAAGPDAGSSSAAAANFT NATKSVVELLTERVNQLSIKTDNDLDFLLDENHNLTEMDTHTAESHLEDKSHRQNEECCSYTSS NRESWGRCSSLGAASDGSSLGERPEIPSHKHKVKMAVQYMRRVIQRRAKFDIMDLDVVQFAPKT FIPALFGHASNDMFIQPHHTDRIHQAYAGDKNLIKFDGDHNSPRPQFYYDSVSIFFYNVLHPPQ FPSVCSNKLDKYYNLGAFKVGAGTNESLLYEIINGLRAAGPDAGSSSAAAANFTNATKSVVELL TERVNQLSIKTDNDLDFLLDENHNLTEMDTHTAESHLEDKSHRQNEECCSYTSSNRESWGRCSS LGAASDGSSLGERPEIPSHKHK(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Ye et al., 2015;Chu et al., 2017

circRNA

Detail information of Os06g0609700_circ_g.2

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