Detail information of BGIOSGA011229_circ_igg.1


General Information
CircRNA Name BGIOSGA011229_circ_igg.1
ID in PlantcircBase osi_circ_014037
Alias Chr03:5809869_5810406(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr3: 6277753-6278229  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA011229_circ_igg.2 BGIOSGA011229_circ_igg.3
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   CT-NN
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTATCTTCTTCCTCATACCTTCCTCCTCCATAGCCACCACCACCACCACTAGTAGGCTTCTTCT
TGTAATCTTCTTCTTCTTCTTCTTCGTACCTCCCACcatggcctccaccacttgaagcaccata
cccatatccaccactaggcttcttgttgtactcatcatcctcctcatacctccctccaccatga
ccaccacc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CATGGCCTCCACCACTTGAAGCACCATACCCATATCCACCACTAGGCTTCTTGTTGTACTCATC
ATCCTCCTCATACCTCCCTCCACCATGACCACCACCAGGCTTCTTCTTGTACTCATCCTCATAC
CTTCCACCACCTCCATATCCACCCGCACCGGCACTCGGCTTCTTCCTGTAATCATCTTCTTCTT
CCTCATACCTCCCCCCACCATAGCCACCCCCACTCGGCTTCTTTCTATATTCATCTTCTTCCTC
ATATCTTCCTCCTCCATAGCCACCACCACCACCACTACTAGGCTTCTTCTTGTAATCATCTTCT
TCCTCATACATTCCTCCTCCATAGCCACCACCACCACTAGTAGGCTTCTTCTTGTAATTATCTT
CTTCCTCATACCTTCCTCCTCCATAGCCACCACCACCACCACTAGTAGGCTTCTTCTTGTAATC
TTCTTCTTCTTCTTCTTCGTACCTCCCAC
Conservation Information
Conserved circRNAs osa_circ_018462 osa_circ_018461 osa_circ_018460
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021