Plant Circular RNA Database

Detail information of orai.012G147100_circ_g.1

			
						 General Information
					
						CircRNA Name
						orai.012G147100_circ_g.1
					
						ID in PlantcircBase
						gra_circ_001345
					
						Alias
						Chr12:32120480|32122392
					
						Organism
						
							Gossypium raimondii						
					
						Position
						
							chrChr12: 32120480-32122392  JBrowse»						
					
						Reference genome
						
							Graimondii_221						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRI
					
						Parent gene
						
							Gorai.012G147100						
					
						Parent gene annotation
						
							NA							
					
						Parent gene strand
						+
					
						Alternative splicing
						
							NA						
					
						Support reads
						2
					
						Tissues
						ovule
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Gorai.012G147100.3:10
Gorai.012G147100.5:10
Gorai.012G147100.4:10
Gorai.012G147100.1:10
Gorai.012G147100.6:10
Gorai.012G147100.2:10

General Information
CircRNA Name	orai.012G147100_circ_g.1
ID in PlantcircBase	gra_circ_001345
Alias	Chr12:32120480\|32122392
Organism	Gossypium raimondii
Position	chrChr12: 32120480-32122392 JBrowse»
Reference genome	Graimondii_221
Type	e-circRNA
Identification method	CIRI
Parent gene	Gorai.012G147100
Parent gene annotation	NA
Parent gene strand	+
Alternative splicing	NA
Support reads	2
Tissues	ovule
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Gorai.012G147100.3:10 Gorai.012G147100.5:10 Gorai.012G147100.4:10 Gorai.012G147100.1:10 Gorai.012G147100.6:10 Gorai.012G147100.2:10

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							AGTTACTATGTTCGAAAATGATGAGAGGTATAAAGCTGTTGAACGGGAGAAGGATAGGAAGGAT
TTTTTTGAGAATTACATCGATGAACTCAGGCAAAAGagggcggatgcatcgactaactggaaag
aatatactagtcctgatggaagaaagtgcgtaactagaatgatttcttttaggcttctataaat
ttttgtca

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							AGGGCGGATGCATCGACTAACTGGAAAGAATATACTAGTCCTGATGGAAGAAAGTGCGTAACTA
GAATGATTTCTTTTAGGCTTCTATAAATTTTTGTCATTTTTTATCAGATTCTTTTTTGAACATT
GCAGGTATTACTACAACAAGGTTACCAATCTATCAACATGGTCACTCCCTGAAGAGCTGAAGGT
CTCCTCTTACAACAACCTTTTAACTTATTATTCCTGTGATTCTTATCATGGCCATGGCCCCTTA
CCTTCTCTTTTTGAATTGGTGTTATAATATTCAAGTTGGCTCGTGAACAAGTAGAAATGGCGTC
TGCCAAAGGACCACTGTCAGATGTTTCTTCTCATATTCCAGCTCCTGTACCTCCTGCAAGTAAA
GCACAATCTGGTGCTGATACACCGTCTACAATAATTCAAGGAGCTTCCTCAAGTCCGGTTCCAG
TGGCACCAGTTCCTTCTAGTAGTAAAATTGAATCTGTGGTGGTTTCTGGGTCAGATTTACCTGT
TGCAACTTCTTCAACAGTGACCAATGTAGATGTGGTTCAGATAGTTGAGGATACTATCACACCA
TCTGTTGCTGTTTCAGAAAGTTCTGAAGTTTCTCTCTCAGTGGCTGATGCTGCTACGACACTGA
TGTATTGTTATCTTAACTGGTTTTGAGTGATCTTCTTTTAACTTTACATTTTTCATCTTTGAAT
GATTTTCTGTTCCTTAAATTTTAGGAATAATATCAGCAAAGTTTCTTCTTTGGATATGGTTAGT
TCTGAAGGAGTTTCAACACAAAATGCAGATGTATGTGACGGATTTATTCATATTTTCTTCTAGC
AATAATTTCTCTATATGCTTAATCGGCAAGATCAGAAGTGATTTCTGTTTTTTCAGGAAACTGT
AAAAGATGTGGTAGTGAGTGAGAAAATTAACAATGCATTGGAAGAGAAAGCAATTGATCAAGAA
TCTTTGACTTATGCCAGCAAGCAAGTATGTAGCAGAATTTTCCATACCCTTCAGCTAATGTTCC
TTTTACAGTTCCTGACCCTTATTACTTACAAAGTAATTTTCACTTCTAGGAGGCTAAAGATGCA
TTCAAAGCTCTTTTGGAGTCTGCAAATGTTGGTTCTGACTGGACATGGGATCAGGTAAATCAAT
AGGTGGTTTGAAGTATGTCAACACCGTTAAATGTATTTCTTGCATTTCTGTGAGCATCTGATAT
TCTAATTGATTATGATAGGCCATGAGAGTAATAATAAACGACAAAAGATATGGTGCTTTGAGAA
CACTTGGGGAGAGAAAGCAAGCTTTTAATGAGGTAGATCCTTGTACTGTTTTCAGTTTTAGTCA
CTCTTATTCAGTGCATGTAGCTTGATTGGTTTCAAATTAAGTGACAATTTATGTTGTTCATTAT
ATTTTCATCAAGTGTTATTTATAATTATCATAAAATTTTCCCATTTTTCAGTTTTTGGGTCAAA
AGAAAAAACAGGATGCTGAGGAAAGGCGGATTAAACAGAAAAAAGCCCGGGAAGAATATAAAAA
AATGTTAGAAGTAAGTTATTTGCCGCACTAGAGATTGTATAGTCTCTTTTTACTAGATTTAATT
TTTTTCTTACTCTTGTGATAATCATTGATGTTGTACAGGAGTGCTTGGAGTTGACGTCATCCAC
AAGATGGAGGTTTGTTTGTTTTTATTCCCTACTTTAACATTGATAACGTTCTGGTTTGGGTCTT
ATACCAAGGTTTGGTATAGCATGGGTATTACATGGCAAGTGGTCTTTGCTAATGGGGTTGTTAC
ACTATCATATTTCAGCAAAGCAGTTACTATGTTCGAAAATGATGAGAGGTATAAAGCTGTTGAA
CGGGAGAAGGATAGGAAGGATTTTTTTGAGAATTACATCGATGAACTCAGGCAAAAG
						
					

			
		

Sequences
Splice junction sequence	AGTTACTATGTTCGAAAATGATGAGAGGTATAAAGCTGTTGAACGGGAGAAGGATAGGAAGGAT TTTTTTGAGAATTACATCGATGAACTCAGGCAAAAGagggcggatgcatcgactaactggaaag aatatactagtcctgatggaagaaagtgcgtaactagaatgatttcttttaggcttctataaat ttttgtca
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	AGGGCGGATGCATCGACTAACTGGAAAGAATATACTAGTCCTGATGGAAGAAAGTGCGTAACTA GAATGATTTCTTTTAGGCTTCTATAAATTTTTGTCATTTTTTATCAGATTCTTTTTTGAACATT GCAGGTATTACTACAACAAGGTTACCAATCTATCAACATGGTCACTCCCTGAAGAGCTGAAGGT CTCCTCTTACAACAACCTTTTAACTTATTATTCCTGTGATTCTTATCATGGCCATGGCCCCTTA CCTTCTCTTTTTGAATTGGTGTTATAATATTCAAGTTGGCTCGTGAACAAGTAGAAATGGCGTC TGCCAAAGGACCACTGTCAGATGTTTCTTCTCATATTCCAGCTCCTGTACCTCCTGCAAGTAAA GCACAATCTGGTGCTGATACACCGTCTACAATAATTCAAGGAGCTTCCTCAAGTCCGGTTCCAG TGGCACCAGTTCCTTCTAGTAGTAAAATTGAATCTGTGGTGGTTTCTGGGTCAGATTTACCTGT TGCAACTTCTTCAACAGTGACCAATGTAGATGTGGTTCAGATAGTTGAGGATACTATCACACCA TCTGTTGCTGTTTCAGAAAGTTCTGAAGTTTCTCTCTCAGTGGCTGATGCTGCTACGACACTGA TGTATTGTTATCTTAACTGGTTTTGAGTGATCTTCTTTTAACTTTACATTTTTCATCTTTGAAT GATTTTCTGTTCCTTAAATTTTAGGAATAATATCAGCAAAGTTTCTTCTTTGGATATGGTTAGT TCTGAAGGAGTTTCAACACAAAATGCAGATGTATGTGACGGATTTATTCATATTTTCTTCTAGC AATAATTTCTCTATATGCTTAATCGGCAAGATCAGAAGTGATTTCTGTTTTTTCAGGAAACTGT AAAAGATGTGGTAGTGAGTGAGAAAATTAACAATGCATTGGAAGAGAAAGCAATTGATCAAGAA TCTTTGACTTATGCCAGCAAGCAAGTATGTAGCAGAATTTTCCATACCCTTCAGCTAATGTTCC TTTTACAGTTCCTGACCCTTATTACTTACAAAGTAATTTTCACTTCTAGGAGGCTAAAGATGCA TTCAAAGCTCTTTTGGAGTCTGCAAATGTTGGTTCTGACTGGACATGGGATCAGGTAAATCAAT AGGTGGTTTGAAGTATGTCAACACCGTTAAATGTATTTCTTGCATTTCTGTGAGCATCTGATAT TCTAATTGATTATGATAGGCCATGAGAGTAATAATAAACGACAAAAGATATGGTGCTTTGAGAA CACTTGGGGAGAGAAAGCAAGCTTTTAATGAGGTAGATCCTTGTACTGTTTTCAGTTTTAGTCA CTCTTATTCAGTGCATGTAGCTTGATTGGTTTCAAATTAAGTGACAATTTATGTTGTTCATTAT ATTTTCATCAAGTGTTATTTATAATTATCATAAAATTTTCCCATTTTTCAGTTTTTGGGTCAAA AGAAAAAACAGGATGCTGAGGAAAGGCGGATTAAACAGAAAAAAGCCCGGGAAGAATATAAAAA AATGTTAGAAGTAAGTTATTTGCCGCACTAGAGATTGTATAGTCTCTTTTTACTAGATTTAATT TTTTTCTTACTCTTGTGATAATCATTGATGTTGTACAGGAGTGCTTGGAGTTGACGTCATCCAC AAGATGGAGGTTTGTTTGTTTTTATTCCCTACTTTAACATTGATAACGTTCTGGTTTGGGTCTT ATACCAAGGTTTGGTATAGCATGGGTATTACATGGCAAGTGGTCTTTGCTAATGGGGTTGTTAC ACTATCATATTTCAGCAAAGCAGTTACTATGTTCGAAAATGATGAGAGGTATAAAGCTGTTGAA CGGGAGAAGGATAGGAAGGATTTTTTTGAGAATTACATCGATGAACTCAGGCAAAAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.107826451

Conservation Information
Conserved circRNAs	NA
PMCS	0.107826451

			
				
						 Functional Information
					

				
						Coding potential
						Y
					

						Potential coding position
						
							32120792-32122389(+)
32122310-32120664(+)
						
					

						Potential amino acid sequence
						
							MASAKGPLSDVSSHIPAPVPPASKAQSGADTPSTIIQGASSSPVPVAPVPSSSKIESVVVSGSD
LPVATSSTVTNVDVVQIVEDTITPSVAVSESSEVSLSVADAATTLMNNISKVSSLDMVSSEGVS
TQNADETVKDVVVSEKINNALEEKAIDQESLTYASKQEAKDAFKALLESANVGSDWTWDQAMRV
IINDKRYGALRTLGERKQAFNEFLGQKKKQDAEERRIKQKKAREEYKKMLEECLELTSSTRWSK
AVTMFENDERYKAVEREKDRKDFFENYIDELRQKRADASTNWKEYTSPDGRKYYYNKVTNLSTW
SLPEELKLAREQVEMASAKGPLSDVSSHIPAPVPPASKAQSGADTPSTIIQGASSSPVPVAPVP
SSSKIESVVVSGSDLPVATSSTVTNVDVVQIVEDTITPSVAVSESSEVSLSVADAATTLMNNIS
KVSSLDMVSSEGVSTQNADETVKDVVVSEKINNALEEKAIDQESLTYASKQEAKDAFKALLESA
NVGSDWTWDQAMRVIINDKRYGALRTLGERKQAFNEFLGQKKKQDAEERRIKQKKAREEYKKML
EECLELTSSTRWSKAVTMFENDERYKAVEREKDRKDFFENYIDELRQKRADASTNWKEYTSPDG
RKYYYNKVTNLSTWSLPEELKLAREQVEMASAKGPLSDVSSHIPAPVPPASKAQSGADTPSTII
QGASSSPVPVAPVPSSSKIESVVVSGSDLPVATSSTVTNVDVVQIVEDTITPSVAVSESSEVSL
SVADAATTLMNNISKVSSLDMVSSEGVSTQNADETVKDVVVSEKINNALEEKAIDQESLTYASK
QEAKDAFKALLESANVGSDWTWDQAMRVIINDKRYGALRTLGERKQAFNEFLGQKKKQDAEERR
IKQKKAREEYKKMLEECLELTSSTRWSKAVTMFENDERYKAVEREKDRKDFFENYIDELRQKRA
DASTNWKEYTSPDGRKYYYNKVTNLSTWSLPEELKLAREQVEMASAKGPLSDVSSHIPAPVPPA
SKAQSGADTPSTIIQGASSSPVPVAPVPSSSKIESVVVSGSDLPVATSSTVTNVDVVQIVEDTI
TPSVAVSESSEVSLSVADAATTLMNNISKVSSLDMVSSEGVSTQNADETVKDVVVSEKINNALE
EKAIDQESLTYASKQEAKDAFKALLESANVGSDWTWDQAMRVIINDKRYGALRTLGERKQAFNE
FLGQKKKQDAEERRIKQKKAREEYKKMLEECLELTSSTRWSKAVTMFENDERYKAVEREKDRKD
FFENYIDELRQK(+)
MMRGIKLLNGRRIGRIFLRITSMNSGKRGRMHRLTGKNILVLMEESITTTRLPIYQHGHSLKS*
(+)
						
					

						Sponge-miRNAs
						
							NA						
					

						circRNA-miRNA-mRNA network
						 VISUALIZATION
					

						Potential function description
						NA
					

			
		

Functional Information
Coding potential	Y
Potential coding position	32120792-32122389(+) 32122310-32120664(+)
Potential amino acid sequence	MASAKGPLSDVSSHIPAPVPPASKAQSGADTPSTIIQGASSSPVPVAPVPSSSKIESVVVSGSD LPVATSSTVTNVDVVQIVEDTITPSVAVSESSEVSLSVADAATTLMNNISKVSSLDMVSSEGVS TQNADETVKDVVVSEKINNALEEKAIDQESLTYASKQEAKDAFKALLESANVGSDWTWDQAMRV IINDKRYGALRTLGERKQAFNEFLGQKKKQDAEERRIKQKKAREEYKKMLEECLELTSSTRWSK AVTMFENDERYKAVEREKDRKDFFENYIDELRQKRADASTNWKEYTSPDGRKYYYNKVTNLSTW SLPEELKLAREQVEMASAKGPLSDVSSHIPAPVPPASKAQSGADTPSTIIQGASSSPVPVAPVP SSSKIESVVVSGSDLPVATSSTVTNVDVVQIVEDTITPSVAVSESSEVSLSVADAATTLMNNIS KVSSLDMVSSEGVSTQNADETVKDVVVSEKINNALEEKAIDQESLTYASKQEAKDAFKALLESA NVGSDWTWDQAMRVIINDKRYGALRTLGERKQAFNEFLGQKKKQDAEERRIKQKKAREEYKKML EECLELTSSTRWSKAVTMFENDERYKAVEREKDRKDFFENYIDELRQKRADASTNWKEYTSPDG RKYYYNKVTNLSTWSLPEELKLAREQVEMASAKGPLSDVSSHIPAPVPPASKAQSGADTPSTII QGASSSPVPVAPVPSSSKIESVVVSGSDLPVATSSTVTNVDVVQIVEDTITPSVAVSESSEVSL SVADAATTLMNNISKVSSLDMVSSEGVSTQNADETVKDVVVSEKINNALEEKAIDQESLTYASK QEAKDAFKALLESANVGSDWTWDQAMRVIINDKRYGALRTLGERKQAFNEFLGQKKKQDAEERR IKQKKAREEYKKMLEECLELTSSTRWSKAVTMFENDERYKAVEREKDRKDFFENYIDELRQKRA DASTNWKEYTSPDGRKYYYNKVTNLSTWSLPEELKLAREQVEMASAKGPLSDVSSHIPAPVPPA SKAQSGADTPSTIIQGASSSPVPVAPVPSSSKIESVVVSGSDLPVATSSTVTNVDVVQIVEDTI TPSVAVSESSEVSLSVADAATTLMNNISKVSSLDMVSSEGVSTQNADETVKDVVVSEKINNALE EKAIDQESLTYASKQEAKDAFKALLESANVGSDWTWDQAMRVIINDKRYGALRTLGERKQAFNE FLGQKKKQDAEERRIKQKKAREEYKKMLEECLELTSSTRWSKAVTMFENDERYKAVEREKDRKD FFENYIDELRQK(+) MMRGIKLLNGRRIGRIFLRITSMNSGKRGRMHRLTGKNILVLMEESITTTRLPIYQHGHSLKS* (+)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Zhao et al., 2017b

circRNA

Detail information of orai.012G147100_circ_g.1

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