Detail information of Zm00001d011177_circ_g.1


General Information
CircRNA Name Zm00001d011177_circ_g.1
ID in PlantcircBase zma_circ_002804
Alias circ2767
Organism Zea mays
Position chr8: 141827611-141832175  JBrowse»
Reference genome AGPv4.38
Type   u-circRNA
Identification method CIRCexplor2
Parent gene Zm00001d011177
Parent gene annotation Vacuolar protein-sorting protein 33
Parent gene strand -
Alternative splicing NA
Support reads 5
Tissues seedling leaves
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered Zm00001d011177_T008:5
Zm00001d011177_T001:5
Zm00001d011177_T007:5
Zm00001d011177_T005:5
Zm00001d011177_T006:5
Zm00001d011177_T004:3
Zm00001d011177_T003:4
Zm00001d011177_T002:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CACTCAAAACTGACTAACCTGCCTCTTAAGAAGGCCAGCCTTCTCCAGATTGTATAATAAGTGC
ATGTGCTCAAAGCCATAACTATGAAGTATCTCCCGCcctgtcaatactctgttgagcccctaaa
cctggatgtacctccggtgatgaattaattgtcaaaccaccctatataagtgagaaaatctgta
aggatttt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTGTCAATACTCTGTTGAGCCCCTAAACCTGGATGTACCTCCGGTGATGAATTAATTGTCAAA
CCACCCTATATAAGTGAGAAAATCTGTAAGGATTTTTTTTTGCTTCCCTAAAACACAAAGTCAA
TTCAACGAACTCTACTCACTCTTTTCAAATCCAGATGTGGGCCTGGCAATAGTTTCAACAGTTC
TTCAATAGACCGCCTGCAAAGTGAAATAAATTTCAGTGTCAGAAAATATATGCAGCAAACGTTT
TATCCATTAATAAAGTCATGCACGCAAACCACTTGTACCACATAACAGCTGAATCTTTCACACC
CGAAAAGGATGGGTGAAGCATTTGTTGCCAAATAAACAGAACTTTTAAATCTGATATATTGGTA
AAAACTAGGATCTGTTTTGAACTATAAGAGCAGAAATGTAGATAGAGGAAATTTGGGCGACACT
CCTATCATACGGGATACTCAATCTAGTAGAACCTTTTGTAATTTATATCAACAGAATGGCTCAT
AAGTTTCCACGACTGAAATCTGCACAATTTATAAATATAAGAAAAAAAAATGGGAGGCCACGTT
CCTAAGGCTATGCCCAGCACCTAACGAGCATACGCATATCCCATGCCACGGCCGTTGCATGCGC
AATCAAAAAAGCAACCGTTTCTAGCAGCATGCGCATCTTCTCTCACAGGGGAGAGACAAAGCAC
GAATAGGCGCGACCGCACCGCCGATCACACATTTTGCGCGAAGGCATCCACGACCTACTGGAAG
CGTGAATAGTGTGTCGCGGTCGCGCGAAATGCGCATGCGCGAGCCAATACGCATGTTGGACACA
GCTTAAGAAATACATGGGACAAATTTCTTTCCTTCCATAAATAATGCATGTATGTTTTACACAA
GAAAAAGAAATTAATCAAAATCATGTGTAGTAAGAACATTCCGTTACTCAAAGAGACCTAGATA
TTGTATTCTCTGACTTCTTTTGGCATAGAAACATTTCTTCCATAGGAAGTGAAACAATCCTTTC
TCCACAGATTACATGCTAAGCAACACTTGTCATCGTAAAATGTAAAGGGACACATAGAAACTAG
CATGAGAAACATACCATCCAGATCTCACTGCATGCTGAACAAGGCGAATACTAAGAGGTGCGTA
TCCAGAAAAGATGTAGGATATATCAGTAGGGCTGAGATTGATGATAAGAATAGATTAGTAGCAG
TTCAAGGTGCAATTAGATATTGAATGGCTAGTTACAACGAGCTGATGAATGGCCATGATTATGC
CTTGAATACTCATTACAATGAAGCAGAGCATTACAGGAAAACAAATGAATAACTTACAAACAAA
ACTAGAAGTGAAGAGAAAAAATATTGACTCCAATACTTTGGTAAAAATTTAGGATGAAATTTGA
AAGGGTGTACCTAAACAGTTTATATAACTTATATGAAGGCACAAACAGTTTACATTTCTTGAAC
ATGCAGAAGACATGTGTATCATTGCACTGTGGATAAAGTTTAAAAACACAACTCCCTTGTGTGC
CGGTGTTTAGGTGTAGACGTCGTCAAGTGCAAGGTTTTGAAGTCGTCCGACTAATCGCGATTAG
TCGTGATTAGTCGGCCTTATCGCCAGAGTAAGCACAATTAGGGGTAGTTCTGCAACCTGACATC
GCAGACCAACACATCTGGCGCCTCTAGTTGCTTGCCCTCTGTGTGATCAGGCCGAGGAAACCAT
CCAGCATATTCTTGTATCCTGCGTGTTCGCTCGGCAGATATGGACGTCCATACTACACAATTTA
GGCCTCCTAGCCATTGTACCTCCACATGGATGCACTCGTTTCTCAAATTGGTGGTGCCAAAGTA
TCAAGAAAGTGGAGAAGAGTCTAAGAAAAGGTCTTAATTCCTTGATCATTTTGGTCGCTTGGGA
GATTTGGAAGCACCGTAATGCTTGTGTTTTTGTGGGGGTTGTGCCCTGCACCCAGCGAGTTCAG
AGTGCTGTGATTGAGGAGGGCAGCGTTTGGTGCTTGGCTGGTGCATCAGCTCTGCAGGACCTCC
TGCTGCGCCAGCTCCCTAGGGGACCCTAGCAGTTTTCCTGCTGGTGGTCGTTTTTGGTCGGGTT
GTTGCTATGTGTGTGCGTGGTGCGTAGTGTTAATGTCGGGGGGGTCTCAGCCTAGGGGCCTTTG
TATTTAGGGGTTGACAAGTCTTGTCTCTCCTATGTTCTTTTTTTCTTCTTAATATAATGACACA
CAGCTCTCCTGCGTTTGTTAAAAAAAGGAAGCGATTAGTCGTGCTAGTCACTAACTAATCACGA
TTAGTCGCCCAATTAGGGGTCATGTCCGACTAGCTAGTGCCTGTTTTGGGCCAGTAATTCGTCC
TTTGTTCTATGGGCCAGTGGGCGGCCCACCATCTCTGCAGAAAGTAGAAAACTTATGTCGTCCC
TTCTCTAGCGCGCGGCTGCGCACTCTCTGCAGCCCTTCTCCAGCACGCGGCTGTGCCCCCTCTG
CTCCGACGGCCCTCTGCTCCAGCACGTGGCTGCTGCAGAGGCCTCTGCTCGAGCCAATCCCCTC
CAGTGTGTGGCGCACGCCTCTGCTCCAGGCCTCCACCACTGATCCACTCCGCCTCCTCCATCGA
ACTTCTTCAGAGTGAATTAGTTTAGAGTCTGTTCTGAACTTCAGAAATCGGAAATTCAGAGTTC
AGACTTCAGAGTTCACACTAAAGGAAAGTCTTGTAGCCTCTTGGTAGGCTGGGGTGGTGGTGTG
TCATGTGACTGGTATGTGTCTGTGTTGTGTGTGTTTGGTGTATGTGTGTGTGTGTGTTTTGTGT
GAGTCAGATGTGTTTTTTTGTGTTGTGTTCTGATTGTCTCAAGCCTCAGGCCTTTTTCCCTCTA
CTTTAATATAAAGATATGCAGCCCTCCTGCGTATTCGAGAAAAAAAGACTTCCGAGTTCACAGT
TCAGACTTTCAGAGTCTGTTGTTCTGCTACAGCTATAATATATTGTTGTCCTGCTACAGCTATA
GTGTACTGCTGTATTGCAGTACTGCTACAGCTATATATATTTATGCATATGGTCCTGTTATAGG
TGGATGACTATAGACGACTAGGAGTCGACTAGGCTCGACTAATCGAGCAAATCGACAACCAATC
GGGATTAGTCACCTTATCGGTGGTTAGGCAACTAGATTCGACTAGTCGACTTTGAAACCTTGGT
CAAGTGCCTTTGGTCGTGTGCTGCCTGTCTTGGAAAGTCGGAGCTGCTCGTCCCTTGTGTTGAG
ATCTGCAACGATGACTCATGACGGGCTGTGTGTGAGGCTGTTGTTGTCTGGGTTGTTTGTGGGG
GCATTCTGCAGGTTTCTCTACTGTGCACCCTGTGTAGATTTTGGGTCCGGTTTTTCTTTAAAAC
TGGGTCAATTCCTTTCTTCTTGATTGAGAGGCATAGCTCCTTCCATTGCATTTAAAAAAGAAAC
AATACAACTCCCTCTGTTTCAAAATGTAAAATGCTTTAGTTTTGCCTTAAACTTCTCTAACTCT
AACATCTGCAACACCATATTAGTAGTGCATTTATATCCTACTGTAGATGTTAATATATTTTTTA
CATTAAGGCTCTGTTTGGCACAGCTCCACTTTGCCAGTGAAGCCCCTTTTTTTGTTCAGCTCCA
CGAGCAGCTCTATTGGGGAAGCTAAAGCTGTTCTCTTGAACCATTTGACAAAAGGCATGATAGA
AAAAATGCATAAAATGGCAATAATACCCTTCTTTTTTCATCATCTATTTTTTATCCACTCATCC
CTCACGGCACGAGCGCCTTCCCCGATCTTTCTTCCGCGGTGGCTCCTCTCGATCTCCTTACCTG
GCGACTGCATGCCCCAGCAGACCATGCCTGCTCCTAGTGACAGTCGCACCCGCACCAACGTCCG
CTCCCTCCCCGCGCCTGCTAACAGGGGCAAACACGACCTTCAACTCATGCTGGGGCCCATGATG
CGAGTTGGAGCTGGGTGAAGCTACTACTTTCAGGTTCAGGTCCATGCTCACAAAACCTTTGAGG
GCAGGACTTTGAGGAGCTCCTTGGGTGGAGTTATTTGGTTTTACCCCAATTTGCACAAAACAGC
TCAAGGAGCTGGTGGTGGAGTTGTGCCAAACAGGGCCTAACTTGGTCAAAAGTTAGAGGAGTTT
AACTTCGTACAAAACTTAAACACCTTACATTTTGGAATAAAGGCAGTATTTAGGTGACCATGCA
TATATGAAACCAAACGCTTGTAGCATGAGCAAATAGAACATAATGCAAAGCATATATAAAGCTT
CAAGAATTAATACTTTGCTGTATCATTTACGTCAACTATAAGCTGCAGTGCTCTTGTAATACCA
ACCCAATTGCTTCTTGATTCCTGGGTAGTGCAGCAATATGTCATTAAAGATTATGAAGGCAAAA
GAAAACAACACTGAAGGAACCACAGATGACTGAAGAAACAGTTCAGTGACACTCAAAACTGACT
AACCTGCCTCTTAAGAAGGCCAGCCTTCTCCAGATTGTATAATAAGTGCATGTGCTCAAAGCCA
TAACTATGAAGTATCTCCCGC
Conservation Information
Conserved circRNAs NA
PMCS 0.029557629
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chen et al., 2017b