Plant Circular RNA Database

Detail information of Pbr012662.1_circ_g.1

			
						 General Information
					
						CircRNA Name
						Pbr012662.1_circ_g.1
					
						ID in PlantcircBase
						pbe_circ_000075
					
						Alias
						pear_circRNA_0000785
					
						Organism
						
							Pyrus betulifolia						
					
						Position
						
							chrscaffold194.0: 603873-649916  JBrowse»						
					
						Reference genome
						
							Pyrus_bretschneideri_scaffold						
					
						Type  
						
							ei-circRNA							
									
						Identification method
						find_circ, CIRI
					
						Parent gene
						
							Pbr012662.1						
					
						Parent gene annotation
						
							NA							
					
						Parent gene strand
						+
					
						Alternative splicing
						
							Pbr012662.1_circ_g.2 Pbr012662.1_circ_g.3 Pbr012662.1_circ_g.4 						
					
						Support reads
						NA
					
						Tissues
						leaf
					
						Exon boundary  
						
							No-No							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Pbr012662.1:2

General Information
CircRNA Name	Pbr012662.1_circ_g.1
ID in PlantcircBase	pbe_circ_000075
Alias	pear_circRNA_0000785
Organism	Pyrus betulifolia
Position	chrscaffold194.0: 603873-649916 JBrowse»
Reference genome	Pyrus_bretschneideri_scaffold
Type	ei-circRNA
Identification method	find_circ, CIRI
Parent gene	Pbr012662.1
Parent gene annotation	NA
Parent gene strand	+
Alternative splicing	Pbr012662.1_circ_g.2 Pbr012662.1_circ_g.3 Pbr012662.1_circ_g.4
Support reads	NA
Tissues	leaf
Exon boundary	No-No "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Pbr012662.1:2

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
						 Sequences
					
						Splice junction sequence  
						
							GAACTTCTGAAGATCGTGGAACGTAGAAATACTGATCGTAGACATGTGGTTCTGCCAGTGTTCT
ATGATGTGGATCCATCCGATGTCAGGAAGCAGAGTGgttcttttgctgaagcatttgccacaca
tgaggagcgattcagtacggagatggacaaggtggagcagtggagaagagctcttggagatgtt
gcatcttt

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

						Full-length trsnacripts
						
							NA						
					
						Genomic sequence
						
							TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.

Sequences
Splice junction sequence	GAACTTCTGAAGATCGTGGAACGTAGAAATACTGATCGTAGACATGTGGTTCTGCCAGTGTTCT ATGATGTGGATCCATCCGATGTCAGGAAGCAGAGTGgttcttttgctgaagcatttgccacaca tgaggagcgattcagtacggagatggacaaggtggagcagtggagaagagctcttggagatgtt gcatcttt
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS

Conservation Information
Conserved circRNAs	NA
PMCS

			
						 Functional Information
					
						Coding potential
						NA
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	NA
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Wang et al., 2018a

circRNA

Detail information of Pbr012662.1_circ_g.1

Address

Any questions?

Supported by