Detail information of EPlOSAG00000003953_circ_ig.1


General Information
CircRNA Name EPlOSAG00000003953_circ_ig.1
ID in PlantcircBase osa_circ_018621
Alias NA
Organism Oryza sativa
Position chr3: 6583263-6584719  JBrowse»
Reference genome IRGSP-1.0.38
Type   ig-circRNA
Identification method CIRCexplorer
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing EPlOSAG00000003953_circ_ig.2
Support reads 2
Tissues root
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCTTACTAGAGGTGGACCGGGAGGGCTCCCAAGACCAATAGAAGTGCATGCTCATGATCCTCTT
CGTTATGTTGGCGATATGCTGGGGTGGCTACATCAGcgtgctggtttggaacttatggatatga
tgtctgtttaccaagaaggagcttacgaaaggttatgcaggtattggctgtccttctatagtaa
tcttctct
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CGTGCTGGTTTGGAACTTATGGATATGATGTCTGTTTACCAAGAAGGAGCTTACGAAAGGTTAT
GCAGGTATTGGCTGTCCTTCTATAGTAATCTTCTCTCCCTCTCCCTCCCTCCCCTCGCCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGTGTCATTTCTTTTACTTACCTTGTATCTCA
GTGTTCATTCCACAATACTCCCTCCATTCCTAAATGATCGTCGCATTACCAAAAATAAAAGAAA
TTCAATTTGATCGTCCTATTTCGTTAGGAAGCAGCAGAAATCACGGGCAGACGATAACGGTGCT
TCGTATTACACAGCACTGCATGCATGCATTGGCTCTGCGAGAGTTAAGTTGGGAGCTGCTGCAT
GCGTGGAATTAATGCGTTACAGCTGATTGGCTGGTTCATGCGGCATGCAAAATTGATGGAGCGA
CATGCATGGATACGAAGCGTTTGTATGTTGATCGATGCGGATAGTAACTGCTCCTTGGTCTTGC
TGCTTAGGTGAAATACGACGATCAAATTGGAACGGGGGGAGTAGCATTTAGAATTTCTATTCAC
TAGCTTTTATTGCCGATGCCTCTATTGGCTAGTTCATTAGTTTTTGATCTATTCTCTTAATTAT
GTACCAAAGCATGAATGTCTAATTTAGTTTTCATGAAGTTCAACCACTCCTTATTTTGTTACTA
GGTACAACTGAGGAATTAGGCTGTGTTCGGATATGGGGAGTTGGGAACTAAACTCCCCGCACGG
AAAATGGAGCGGTCCATTATCGCGTGATTAATTAAGTATTTGCTTTTTTTTTTTCAAAAATGGA
TCAATATGATTTTTTTAAGCAAGTTTTGTATAGAAACTTTTTGCAAAAAACACATCGTTTAGTA
GTTTGAAAAACGTGCGCGCGGAAAAAGAGAGGGGTGAGTTGGGAACTCTGGGTTCCGAACACAC
CCTTAGTTATCTTGATAAGAACTATAGAACCTTCAGATTGACTAATCTGTTATTTCATTTTGCT
CTTTATAACATGTTCGCTTGACATTTGATGTTCAAGTGGTGTAATTCATCTTGCTTTCTTTTCA
GGTGGGTTCAAGTTGAATGTAAAAGATTAGGTGATACTGACAACCCTGAAGTAAGTGAACTTCT
AAAGAAGGCTGTTCGATGCCTGAAGGAAAGACCTGTTTTATTTAAGTACTGCGCAGAAGAGGTA
TGCTATATTGTACCCTTTTTGAATACTAAGTTTACCTTGAAGATAGTAAAGTTGCCACAATTTA
CATGTTATGATGAGTGATCTGCATCGACAGGTTGCCAATATGAGACATAATGCCTTGTTCAGAC
GGTTTATAAGTGCTCTTACTAGAGGTGGACCGGGAGGGCTCCCAAGACCAATAGAAGTGCATGC
TCATGATCCTCTTCGTTATGTTGGCGATATGCTGGGGTGGCTACATCAG
Conservation Information
Conserved circRNAs NA
PMCS 0.180387154
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs osa-miR2868
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017