Detail information of Os02g0131200_circ_g.1


General Information
CircRNA Name Os02g0131200_circ_g.1
ID in PlantcircBase osa_circ_012971
Alias NA
Organism Oryza sativa
Position chr2: 1632873-1635805  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os02g0131200
Parent gene annotation Similar to RNA-binding region RNP-1 (RNA recognition motif). (Os
02t0131200-01)
Parent gene strand -
Alternative splicing Os02g0131200_circ_g.2 Os02g0131200_circ_g.3
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os02t0131200-01:8
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGGGTGGCTTCTGGAAAGGAATTAGCTCTTATTGTCATGCCAGCGAAGAATGCACCCAGTTGTG
CACTGGATACTGGCTCATCTTTGAGTTCTCCCATTCtgatctatcagttcgtggagtctcagtg
gattcaaaaccaagttcctgagcattcacaatgacactgaagccctctctagaaatgcctgaaa
gatgattg
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 1163
Transcript exons: 1632873-1632958,1633209-1633332,1633622-1633729,1634297-
1634378,1634718-1634770,1634866-1634949,1635092-1635237,
1635326-1635805
TGATCTATCAGTTCGTGGAGTCTCAGTGGATTCAAAACCAAGTTCCTGAGCATTCACAATGACA
CTGAAGCCCTCTCTAGAAATGCCATCAGTCTCGGAGAAATCTGTGCTGTTTGGTATCCGGAACC
CTGAGCAATGGTTCACTGGAAGTCCTTTTGATGCATGAGCAGATCTTTCTTTGGTTGTCATAGA
AAGCGCACCCTCCTCACCCTTTACAACTAGTCCAGCATGAACAGTTCTCCTCCTCATGAGCATA
AGCAATGGATCTTCATAGCCCACATGATAAAATCCAGCAACCATTGATTCTCTTCCTCGCGCTC
TCACAAATTGCTGAACTTTCTCAGAGGTAGCTAGCGGTGGCCGTTTCTTAATATGCTCCCTAAG
CCCAATAATCGAATATAATGGTGGGCAAGCTTCTTGGAGACCCAAATATGCAAAGCCGGTATTC
TCATCCTCCAGTAGTGTTTTGGCCTGTAATGTGGACAAATGTGTGTTTGCACCCATGAATTTAA
GCATCTGACCTTCTGTTATGCCTCCCTTGGGTGGCATCCACTCAACACCATGGAGGAGACAAGC
CTCACCATAGCAGGCTCTAACAGCTGCAACAAACAGAGTACTCCTGAAAAAGCGTGTATTTCCA
TCATAGGGCTCACCATAGTGTGTCAATGATTTGACATCAGCAACTAATTCATCATCAAAGGCTA
GACAATATCCTTTGAGCTCGCGATCAGTCTCCCTATTCATCCGCTGTCCAATAAGAAATGCTGC
CAGCAGTGCTTCATTAACCATAGTTGAATTTGCACTGGCTAATTCAACTGGTAGAACATCCTTT
AGTACACCCTGAACTTCCTCATAACCCAAATGGCCACCAGCAAGAACTTCTCTCAAAGCACTGA
CAAGTCTCATCTCTGCAGTGCTTTGACCAACATACCGAGGTCCAGTTAAACCATTTGCTCCCAT
GATTGTTCCTTCCGGATCTGCTATAAATTTCACCTCGGGGGGAAGAACATTGACAAGCCGTGGC
CAAAATAAGCTCATGGCACGACGCTCACCCTCACTCCATTGGGTGGCTTCTGGAAAGGAATTAG
CTCTTATTGTCATGCCAGCGAAGAATGCACCCAGTTGTGCACTGGATACTGGCTCATCTTTGAG
TTCTCCCATTC

Genomic sequence TGATCTATCAGTTCGTGGAGTCTCAGTGGATTCAAAACCAAGTTCCTGAGCATTCACAATGACA
CTGAAGCCCTCTCTAGAAATGCCTGAAAGATGATTGAGACAAGCTCAGGCTGAAATTATTTCAT
AACCATGTTATTGGGCATTTCAAAACAAGCAATCCAGATTAGTCATTCACAAAACCTCTTTTTT
TTTAAAAAAAATATGAATCAACTTCCAAGATGTATAAATCTTAAATTTTTGAAAACACTGAACA
TACCCCATCATCACCAACAAACACATATGATCACTATGAAGAGGAATATTTATAATCAATAAAA
AGCGAAATATCTTTACCATCAGTCTCGGAGAAATCTGTGCTGTTTGGTATCCGGAACCCTGAGC
AATGGTTCACTGGAAGTCCTTTTGATGCATGAGCAGATCTTTCTTTGGTTGTCATAGAAAGCGC
ACCCTCCTCACCCTACACGCGCACCATAAATTTGAGAAATGACCATGTTTAATTATTGGATTTG
CATTCCGAGAATAATAGAGAAGGGAAAGAAGCTGTTTGTTCAAAAGTTCAGGAGAATGACCTAT
CTGTCAGAAACGGAACTCAAAATGTTAATAGCGCAAGGCGGCCAATTTCTACATATGTGGTCTT
AGCAACAAGTGCACAAATAAACCCATAGGCTGGGTTATATGGGGCAAGACATCTAAACAGTAAC
ATAAAGCTTAAACCCGCCATATAACACATTAACACAAGATAATACCTTTACAACTAGTCCAGCA
TGAACAGTTCTCCTCCTCATGAGCATAAGCAATGGATCTTCATAGCCCACATGATAAAATCCAG
CAACCATTGATTCTCTTCCTCGCGCCTGGTGGAAAATTTGAAGACAAATAAGCCAATCAACCAG
TAGTATTTATTTAAGTGAGCAGAACTTGTGACATTTACAACAGAAACATAATTGAACAAGGAAG
GACATATAATAATAATGCATTCATCTCAAATTTACAACAAATTAACAAGGATTCCCAAATAGTA
GGTGATACAGAACAGTTATATTTTTACATTCAATGAATGTAGAATTACAAGAAATATCTCCAGT
CTTCTTGACTTGTAGTCAAAGAGTTTTTTATGCATACATTATGTTGAGGAAACACTCTGAAAAT
GTAAGCTACTAAACTGCCAAACATTTTACTAAGAAATGAAGACAGTAGGTTGTACTAAATATTT
AAATTAGTAGTTTATCAAAGATCTGCCAGCAGTGAAATGTGACCAATTTTATGTTCTACAGTGG
TATAATATGCACAAATGATCTACAATGTATATATAAACATAAAGGATGCTACAAAAGTTATAAT
AGTTGTACCCATTATGGTGCTCTTATGATACTGTCTTCCTTACAATAAAGGACTACAGGTGGAT
GAGAAGAGTTACTCACTCTCACAAATTGCTGAACTTTCTCAGAGGTAGCTAGCGGTGGCCGTTT
CTTAATATGCTCCCTAAGCCCAATAATCGAATATCTGGAAGAATAGTGAGTAAAAAGAACACAT
TTTCATACATTACAACTTTCAATAAATTGTTTTTTAAATGAAGACAAATATTATAAAGCGGCAA
CATTTAAACTGAAAGCATAAGTTTCCTGCAGTTCCAAAAAAAAGTAAAGGCAGTGATTCCATTT
TGAAAATTTTACTGCTAAACTTCATGGCTGTGTATGGACTTAAGTCAGATATTATGATCAGTTT
TCTTCAGAAAATCAGGCTGAGGTGCCATTCCTGATTATCTGAATGTCTACAGGAATACTATATC
AACAAGACTTGGTCACTGAAGCACATAATTACCAAGAAAATGTCAAAACTTACAATGGTGGGCA
AGCTTCTTGGAGACCCAAATATGCAAAGCCGGTATTCTCATCCTGAAAGCAACCAAAACAGTTG
ATATAATTAGATGCAGTCAGAGGAGAGTGCACAAAAAGGGTTGCAGGAAAATTAGGCAGAAGTT
CATGCACACCTCCAGTAGTGTTTTGGCCTGTAATGTGGACAAATGTGTGTTTGCACCCATGAAT
TTAAGCATCTGACCTTCTGTTATGCCTCCCTGAAAATCTTGATCATTAAGTAATACAGAGGGTT
TTCAAAATTAAGTGATAGGTAAGTCCATCTCCTAACCAAAACTTCCATAGCATTAAAGAAAAAC
ACTAGTGTATGATGATTGTTGATGGGTATGCTTTTGTACTGACCTTGGGTGGCATCCACTCAAC
ACCATGGAGGAGACAAGCCTCACCATAGCAGGCTCTAACAGCTGCAACAAACAGAGTACTCCTG
AAAAAGCGTGTATTTCCATCATAGGGCTCACCATAGTGTGTCAATGATTTGACATCAGCAACTG
GAGTTGGACCTGATATAATGTGGTGTTAATGACACTATAATTTTTTTATATTCAATTTGAGAAA
GAGAAACTGACTTGATGTTACCTAATTCATCATCAAAGGCTAGACAATATCCTTTGAGCTCGCG
ATCAGTCTCCCTATTCATCCGCTGTCCAATAAGAAATGCTGCCAGCAGTGCTTCATTAACCATA
GTTGAATTTGCACTGGCTAATTCAACTGGTAGAACATCCTTTAGTACACCCTGAACTTCCTCAT
AACCCAAATGGCCACCAGCAAGAACTTCTCTCAAAGCACTGACAAGTCTCATCTCTGCAGTGCT
TTGACCAACATACCGAGGTCCAGTTAAACCATTTGCTCCCATGATTGTTCCTTCCGGATCTGCT
ATAAATTTCACCTCGGGGGGAAGAACATTGACAAGCCGTGGCCAAAATAAGCTCATGGCACGAC
GCTCACCCTCACTCCATTGGGTGGCTTCTGGAAAGGAATTAGCTCTTATTGTCATGCCAGCGAA
GAATGCACCCAGTTGTGCACTGGATACTGGCTCATCTTTGAGTTCTCCCATTC
Conservation Information
Conserved circRNAs osi_circ_003633*
PMCS 0.360663124
Functional Information
Coding potential Y
Potential coding position 1635602-1632931(+)
1632927-1635786(-)
1635805-1635742(-)
Potential amino acid sequence MIVPSGSAINFTSGGRTLTSRGQNKLMARRSPSLHWVASGKELALIVMPAKNAPSCALDTGSSL
SSPILIYQFVESQWIQNQVPEHSQ*(+)
MLRNLVLNPLRLHELIDQNGRTQR*(-)
MGELKDEPVSSAQLGAFFAGMTIRANSFPEATQWSEGERRAMSLFWPRLVNVLPPEVKFIADPE
GTIMGANGLTGPRYVGQSTAEMRLVSALREVLAGGHLGYEEVQGVLKDVLPVELASANSTMVNE
ALLAAFLIGQRMNRETDRELKGYCLAFDDELVADVKSLTHYGEPYDGNTRFFRSTLFVAAVRAC
YGEACLLHGVEWMPPKGGITEGQMLKFMGANTHLSTLQAKTLLEDENTGFAYLGLQEACPPLYS
IIGLREHIKKRPPLATSEKVQQFVRARGRESMVAGFYHVGYEDPLLMLMRRRTVHAGLVVKGEE
GALSMTTKERSAHASKGLPVNHCSGFRIPNSTDFSETDGISREGFSVIVNAQELGFESTETPRT
DRSEWENSKMSQYPVHNWVHSSLA*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017