Detail information of BGIOSGA028505_circ_igg.1


General Information
CircRNA Name BGIOSGA028505_circ_igg.1
ID in PlantcircBase osi_circ_017832
Alias Chr08:16277385_16277964(MH63RS2), Chr08:16292779_16293358(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr8: 16738455-16739034  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method CIRI2, CIRI2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   CT-CA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTTCTTTTCAGGGCGCAACGGTGAAGGTGGAGTATGGCGACGCCACCACCACCATCGACCCAAC
CTGCGCCAACGTCGTCGCGCAGGCCTTCCCCCGCACccaccagccaacccaagatcaacaggaa
ccagagagagagatgaacgccgacttcggcgcgcccaaggacctcgcggggggcctccagcagc
ggaggtct
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCACCAGCCAACCCAAGATCAACAGGAACCAGAGAGAGAGATGAACGCCGACTTCGGCGCGCCC
AAGGACCTCGCGGGGGGCCTCCAGCAGCGGAGGTCTCTCTACCAGCCCACCCTCCCTCCCTGCC
TCCAGGTAACTCCTTTCATGCCCCTTCTCTTCTGTGTCCCTGTTTCTTGGTTTCTTGGGTTGGA
TTTAGTGCTGGTTACTCCATATGTGCTCGATTGCAAGCGGTTTTGGTGACAGACATGGGGGGAA
TGATCAGGGGGCTGCAATTTCAGCGACCGCTGTTCTTTGCCTTCGAATTTTCTGGCCAAGAGTG
TTTGAACACTTGTTCTTTTGGTGAAGATTTGTTTGGATTTGAGTCTTTTTCACCTTCTTCCGAA
TTCCGTTGATGAAGATTCGTGGAGTTTCTGCCTGTAATTTGAAGATAAATGCACCAACAGACTT
GATTATTTTTCACTGAAAAAAATTTCTGCTTCTTTCTTTTCAGGGCGCAACGGTGAAGGTGGAG
TATGGCGACGCCACCACCACCATCGACCCAACCTGCGCCAACGTCGTCGCGCAGGCCTTCCCCC
GCAC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021