Detail information of BGIOSGA032594_circ_g.1


General Information
CircRNA Name BGIOSGA032594_circ_g.1
ID in PlantcircBase osi_circ_008814
Alias Chr10:5495211_5496441(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr10: 4109603-4110833  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRCexplorer2
Parent gene BGIOSGA032594
Parent gene annotation NA
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-No
Splicing signals   GT-CA
Number of exons covered BGIOSGA032594-TA:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCAGGGGGTCATGATCATGAGACACAGAATTCTGGATCAGAATCACATGATTCTGATGAATCAA
TACCAACAAGCACAATGCTTGCCAATACCATTCTAGgtgttaattggaccccttcttttttgct
gaagcggtacctattgacaggaatccgagatggcccccatgaaccgtttattgcagactcagtg
gattttgt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTGTTAATTGGACCCCTTCTTTTTTGCTGAAGCGGTACCTATTGACAGGAATCCGAGATGGCCC
CCATGAACCGTTTATTGCAGACTCAGTGGATTTTGTTGTGAGTCAGGTCAGGATCAACTGTAAA
CATTTTATTTGATGTTTGAACTAATTTCATACATGTTATAAATATGAGCATTCAAACTTTATCT
GAAATTGTAATGTTAGGTATTGCTAGTTAGATGACTACTCTGTGCTTGACAACGCATTGTTACT
CAGTGTTGCTCTTCTATTTTACTGGGCTTGTTATTGTTGTTAACAAATTAAAATCTAAATTTTG
CATGCCAGGTTGAGACGCTGTCAAGAGATGATCTCTCATCAAGGTTGATGTTAAATGTTAATGT
TGCATCAGTTGGATCATTAATGCTACCTGATTCACTCATCACTATAATGGATGTAAGTTACCTC
GACCCAAATAATACAAGTGATTCTCATGTGTTTCTGTTTATATAGGGTTTATTTATTATTATTT
TCCATTCTATTGATTGGCTGCACCAGTTAAGAGATAATCTAAGGCTAGCATGGTATTAAGAAGG
AATGATTCTTAATCAGTATGTCATGTGTAGGTATGCTGGGAGATAAGCATGCTAAATTTTTGTA
CCTTACAAGTTACAATCAAGTATGAAGTTGAAATCATCAGAAAAGGGTGCCCAAGGGTTCCCAT
TATCAGAGACCTTGAGCATCCCAGTGTCCCTTGAATGCTAACTGTGTGTGTTGAACATATTTGC
ACAGACAAACGACTATTCCGCTGTTCCTCAGCAGTTAAAGGACCAAGTGAATGAAAGGTACCCA
GGTGCAAGGCGTGCAGTACTAAAGACGGGCGGTGATTTCCCCTTCCTGTCACGTCCTGATGAGG
TTAATTTGTACCTTCAGGTATTGTAAACGCTTCTTCTGCAATCTTTCAGTTTTGAAGGATTTAT
GAATGACAATTTTGAAAACAATGGCAGCTACATTTGAGACGAGTTGGAGTAGAACCTAGACCAG
ATCTGGTCCAAGGTTTCACACGTAATGGCAGTGCTGGGAGCTCAAAGGACCAAAAAGATGGTGG
AAACAATTTTGACAATCATCCTGGAGATAATGGTGGCCCTGGTTCAGGGGGTCATGATCATGAG
ACACAGAATTCTGGATCAGAATCACATGATTCTGATGAATCAATACCAACAAGCACAATGCTTG
CCAATACCATTCTAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021