Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d036888_circ_g.2 |
ID in PlantcircBase | zma_circ_008986 |
Alias | Zm06circ00036, GRMZM2G106427_C1 |
Organism | Zea mays |
Position | chr6: 105648014-105650048 JBrowse» |
Reference genome | AGPv4.38 |
Type | u-circRNA |
Identification method | CIRI2 |
Parent gene | Zm00001d036888 |
Parent gene annotation |
D-aminoacyl-tRNA deacylase |
Parent gene strand | + |
Alternative splicing | Zm00001d036888_circ_g.1 Zm00001d036888_circ_g.3 |
Support reads | NA |
Tissues | leaf, endosperm |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Zm00001d036888_T001:4 Zm00001d036888_T005:3 Zm00001d036888_T004:4 Zm00001d036888_T006:3 Zm00001d036888_T003:4 Zm00001d036888_T002:4 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.150102715 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
105648021-105650045(+) 105648140-105648799(-) |
Potential amino acid sequence |
MESFTNGNVRLLKHERSIVAEDDLDQRWQEATGESVSEVIFLSKHTAVSKRPALTVHPIGVPHL KEDETPPQGGTPGWAAIPSPRIGPWLRLMQKIAVEQGLVPEFEVTLEATHHGPVTSTPTMFVEI GSTEDHWGRQDAAQAIALEAMESFTNGNVRLLKHERSIVAEDDLDQRWQEATGESVSEVIFLSK HTAVSKRPALTVHPIGVPHLKEDETPPQGGTPGWAAIPSPRIGPWLRLMQKIAVEQGLVPEFEV TLEATHHGPVTSTPTMFVEIGSTEDHWGRQDAAQAIALEAMESFTNGNVRLLKHERSIVAEDDL DQRWQEATGESVSEVIFLSKHTAVSKRPALTVHPIGVPHLKEDETPPQGGTPGWAAIPSPRIGP WLRLMQKIAVEQGLVPEFEVTLEATHHGPVTSTPTMFVEIGSTEDHWGRQDAAQAIALEAMESF TNGNVRLLKHERSIVAEDDLDQRWQEATGESVSEVIFLSKHTAVSKRPALTVHPIGVPHLKEDE TPPQGGTPGWAAIPSPRIGPWLRLMQKIAVEQGLVPEFEVTLEATHHGPVTSTPTMFVEIGSTE DHWGRQDAAQAIAL(+) MTSETDSPVASCHRWSRSSSATMLRSCFSNRTFPLVKLSIASRAIACAASCRPQWSSVLPISTN MVGVLVTGPW*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | responsive to drought stress |
Other Information | |
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References | Han et al., 2020;Zhang et al., 2019 |