Detail information of Os02g0258300_circ_g.1


General Information
CircRNA Name Os02g0258300_circ_g.1
ID in PlantcircBase osa_circ_014160
Alias NA
Organism Oryza sativa
Position chr2: 8939137-8941663  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os02g0258300
Parent gene annotation Zinc finger, FYVE/PHD-type domain containing protein. (Os02t0258
300-01);Similar to extra-large G-protein-related. (Os02t0258300-
02)
Parent gene strand -
Alternative splicing NA
Support reads 2
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os02t0258300-02:3
Os02t0258300-01:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCTCCTTTGTTATCTGGTGAACTCTCCAGCACTTCAAGGTACTTCACATGTCCACCATCAGATT
TCTCTGAGGAATTCTCAGATGCTGAGTTCTTCTTTGgttggtgcaagtttgccgagacaataca
gctcctcaccagagacttcatccgacactttaccggacatctcaactctgtatgatctaccggg
agaatctg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTTGGTGCAAGTTTGCCGAGACAATACAGCTCCTCACCAGAGACTTCATCCGACACTTTACCGG
ACATCTCAACTCTGTATGATCTACCGGGAGAATCTGGGAGTCCTCGACCCACAAGTAAATCCAA
ATCCTTCTGGTGAAGTTCTCTCCCATTAACAAATACACCTGTATTTCCAGCAGCGCATTTCTTG
GGCATAGGATAATTGAGTTCTGGAATATATGGCTGCAGCATAGACATTCAGCCAAAAACTTTGA
TCAAAACATATCAGGGTAAGACAAACATATCAGCTACACTGTAATTGCTCTTACCGGTATCATG
CCGAGGCAAGACTGTCCCATTACACCCCAGAAACCAGCACGGTAATCATACCTAAACAATAGGA
CATAAGAACAAAATGTCATTGCCAATGGTGCTGACAGTATTTAGTAATATTTAAAACTAAAATA
TGTCTAAACTGATCGGAGGCAAACAGAAGTTGCAGGCTTACCAGTATTCACCAGGATAGATTGG
TCCAGCTATCTTCTCAGCCTTCCTGACCGCCCGATCAGAGATGGGATAGCCATTAATGAAAACC
TTTGCTCTGCCATTGCCCATTCCGTTGTTAATTTTGAAGCTCTTCTTTATGAGATTGGTGAAAA
ATGAATCACCCGTTTTCACGGCCCGAGGGTGATCTACAGGTTGTGCCACATCACCTCGATCTTG
CATGTAGTCAGGATCATCATACTCATCATCCGACAAGTCCATTATGTTCACTACTGATACATCT
TTTACAGTGTTCTGCTTGAAACTTTCTGTCAACACAGCCTTCTCATGTTCAGATCGAGTACTTC
TGCTTCCTTTCCCTGATCCATCAACTACCTTCTCAGATGGCGAGTATCCAAAATGATCACGAAG
ATGTAAACTTGGAACACGGGTAGACACCTCAGCTTCAGGATGAAGATCCCTAGACCCAGGGGTG
TCCCTCTGGGAATTAGATCTCGCAGGGCTGTTCTCATCTTCAGAAATGCTGCAAGAAGACGATA
TCCCTTGCATTTTTTCAGCTTCACTTGAGTTCGAGGGTAGGTCTTGAGAACCATGACTTGCTGC
AGAAAAACTATAAAGTGGAAGCACCCTCTCATGTGGAGCAGAATTCGCATTGCTTCCTTGGCCA
TCATTGGAACTAATTTTGCTGCCGCCAGATATGTGTGAAATAGGTGAAGGTGCTGAAACATCAA
GCCTGCTTCCATCAAGCTTGACCACAAGCGCATGTGAGCATGACCCGCAACGTAATTTGTACTC
ATCCTTCCCTGGCACGGGGGATTTCTTCGGAAGTTGCAGTACTTCATAGCAGTTGTAGCATATA
GTGAATGGGGCACCACATGCAATCGGTTCACAAGTCTGTGCAGGTTTTTTACTCATAGCGGCCC
TCATGTGATTGCGCTGCATTGAAGCGTTGACTCTTGAATTGTAATTCTGTGTGCCAAACATTGC
AGGACCATCAACCGGGTAAACTCTAGGATTATTCATAACATACGGTGGTACCCTGCGATGGTTG
AAACCCAGAGGAGGCCCCTGAACAGGTAAGAACTCACGGTGGTAGCAATGTAGACAAGAACAGG
CAGGCTGATGGTAGAAGCCATCATGGTGGTAAGAGATCAGAGGGTCAGGATCATACTGTCCATA
AAAATAATTATCAAAATTTCTCCATGGATATGTGCCAACAGGATAGCTTGGAGCCCCCATGTGT
GCCATTGGCTCCCCGTATCCATGAAGATCTTGCTGAGCAGTTCCTGGAGCATAAGCTTGCGGAA
TGCAAGGAGCTTGCCCATTCAAGGATGGTGACTGCTGAGAACCACTCCGCTGCAACTGAGGTGA
ACCATGTCGTAACCGACTCAACCGCTCACGAGGATTATATAACCCTGAGGCATCCACCGCTTTA
TCTGTAGAAGTACTTCCACTTGGCTTGTTGGTGATCTCACAGGATCTCTGCACCTGATCCCTCA
GCTCATCAAGCATCCGTAACAGATCAGCACGGTCTTTTTCAAGACCATTGACTCTGTTTAGGCC
CTCCAAATTTCTCATATCAGCTTGCTCACCATTGGTATGTCTGAATCTTGACTTAATATGGTAG
TCAGACGGGCCTTCTGCAGGATATGCATTCGGAGGGATGGCATCAACAACTGATCTTGGCGATC
TGTCTCTGGCTCTCACTGTGTGTTTTGCTTCTCCTTTGTCCTCACTGCGGATGCGCCGGTACTT
GGCCTCCCGAATTTCCCTGCTGTCATCTCTAAGTGAAGCCTCAAGCTTCAAGGCATTTGGTTCT
CTTGGAATTCGGCTATCATCACAAGCTGCCATTCTGTCAAGAAGTACCTGTCTCTCTTCTGCTT
TAGCTTCTCCATTTTTGGCTTCTCCTTCTTGGGCAGCCTCACAAGTGTCTTTAGATGCAGCTCC
TTTGTTATCTGGTGAACTCTCCAGCACTTCAAGGTACTTCACATGTCCACCATCAGATTTCTCT
GAGGAATTCTCAGATGCTGAGTTCTTCTTTG
Conservation Information
Conserved circRNAs NA
PMCS 0.213517422
Functional Information
Coding potential Y
Potential coding position 8941286-8939216(+)
8941560-8939274(+)
8939292-8941644(-)
8941474-8941644(-)
Potential amino acid sequence MASTTDLGDLSLALTVCFASPLSSLRMRRYLASRISLLSSLSEASSFKAFGSLGIRLSSQAAIL
SRSTCLSSALASPFLASPSWAASQVSLDAAPLLSGELSSTSRYFTCPPSDFSEEFSDAEFFFGW
CKFAETIQLLTRDFIRHFTGHLNSV*(+)
MQLLCYLVNSPALQGTSHVHHQISLRNSQMLSSSLVGASLPRQYSSSPETSSDTLPDISTLYDL
PGESGSPRPTSKSKSFW*(+)
MGENFTRRIWIYLWVEDSQILPVDHTELRCPVKCRMKSLVRSCIVSANLHQPKKNSASENSSEK
SDGGHVKYLEVLESSPDNKGAASKDTCEAAQEGEAKNGEAKAEERQVLLDRMAACDDSRIPREP
NALKLEASLRDDSREIREAKYRRIRSEDKGEAKHTVRARDRSPRSVVDAIPPNAYPAEGPSDYH
IKSRFRHTNGEQADMRNLEGLNRVNGLEKDRADLLRMLDELRDQVQRSCEITNKPSGSTSTDKA
VDASGLYNPRERLSRLRHGSPQLQRSGSQQSPSLNGQAPCIPQAYAPGTAQQDLHGYGEPMAHM
GAPSYPVGTYPWRNFDNYFYGQYDPDPLISYHHDGFYHQPACSCLHCYHREFLPVQGPPLGFNH
RRVPPYVMNNPRVYPVDGPAMFGTQNYNSRVNASMQRNHMRAAMSKKPAQTCEPIACGAPFTIC
YNCYEVLQLPKKSPVPGKDEYKLRCGSCSHALVVKLDGSRLDVSAPSPISHISGGSKISSNDGQ
GSNANSAPHERVLPLYSFSAASHGSQDLPSNSSEAEKMQGISSSCSISEDENSPARSNSQRDTP
GSRDLHPEAEVSTRVPSLHLRDHFGYSPSEKVVDGSGKGSRSTRSEHEKAVLTESFKQNTVKDV
SVVNIMDLSDDEYDDPDYMQDRGDVAQPVDHPRAVKTGDSFFTNLIKKSFKINNGMGNGRAKVF
INGYPISDRAVRKAEKIAGPIYPGEYWYDYRAGFWGVMGQSCLGMIPPYIPELNYPMPKKCAAG
NTGVFVNGRELHQKDLDLLVGRGLPDSPGRSYRVEMSGKVSDEVSGEELYCLGKLAPTKEELSI
*(-)
MAACDDSRIPREPNALKLEASLRDDSREIREAKYRRIRSEDKGEAKHTVRARDRSPRSVVDAIP
PNAYPAEGPSDYHIKSRFRHTNGEQADMRNLEGLNRVNGLEKDRADLLRMLDELRDQVQRSCEI
TNKPSGSTSTDKAVDASGLYNPRERLSRLRHGSPQLQRSGSQQSPSLNGQAPCIPQAYAPGTAQ
QDLHGYGEPMAHMGAPSYPVGTYPWRNFDNYFYGQYDPDPLISYHHDGFYHQPACSCLHCYHRE
FLPVQGPPLGFNHRRVPPYVMNNPRVYPVDGPAMFGTQNYNSRVNASMQRNHMRAAMSKKPAQT
CEPIACGAPFTICYNCYEVLQLPKKSPVPGKDEYKLRCGSCSHALVVKLDGSRLDVSAPSPISH
ISGGSKISSNDGQGSNANSAPHERVLPLYSFSAASHGSQDLPSNSSEAEKMQGISSSCSISEDE
NSPARSNSQRDTPGSRDLHPEAEVSTRVPSLHLRDHFGYSPSEKVVDGSGKGSRSTRSEHEKAV
LTESFKQNTVKDVSVVNIMDLSDDEYDDPDYMQDRGDVAQPVDHPRAVKTGDSFFTNLIKKSFK
INNGMGNGRAKVFINGYPISDRAVRKAEKIAGPIYPGEYWYDYRAGFWGVMGQSCLGMIPPYIP
ELNYPMPKKCAAGNTGVFVNGRELHQKDLDLLVGRGLPDSPGRSYRVEMSGKVSDEVSGEELYC
LGKLAPTKEELSI*(-)
Sponge-miRNAs osa-miR5509
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017