Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | Os02g0258300_circ_g.1 |
| ID in PlantcircBase | osa_circ_014160 |
| Alias | NA |
| Organism | Oryza sativa |
| Position | chr2: 8939137-8941663 JBrowse» |
| Reference genome | IRGSP-1.0.38 |
| Type | e-circRNA |
| Identification method | CIRCexplorer |
| Parent gene | Os02g0258300 |
| Parent gene annotation |
Zinc finger, FYVE/PHD-type domain containing protein. (Os02t0258 300-01);Similar to extra-large G-protein-related. (Os02t0258300- 02) |
| Parent gene strand | - |
| Alternative splicing | NA |
| Support reads | 2 |
| Tissues | root |
| Exon boundary | Yes-Yes |
| Splicing signals | CT-AC |
| Number of exons covered | Os02t0258300-02:3 Os02t0258300-01:3 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | NA |
| PMCS | 0.213517422 |
| Functional Information | |
|---|---|
| Coding potential | Y |
| Potential coding position |
8941286-8939216(+) 8941560-8939274(+) 8939292-8941644(-) 8941474-8941644(-) |
| Potential amino acid sequence |
MASTTDLGDLSLALTVCFASPLSSLRMRRYLASRISLLSSLSEASSFKAFGSLGIRLSSQAAIL SRSTCLSSALASPFLASPSWAASQVSLDAAPLLSGELSSTSRYFTCPPSDFSEEFSDAEFFFGW CKFAETIQLLTRDFIRHFTGHLNSV*(+) MQLLCYLVNSPALQGTSHVHHQISLRNSQMLSSSLVGASLPRQYSSSPETSSDTLPDISTLYDL PGESGSPRPTSKSKSFW*(+) MGENFTRRIWIYLWVEDSQILPVDHTELRCPVKCRMKSLVRSCIVSANLHQPKKNSASENSSEK SDGGHVKYLEVLESSPDNKGAASKDTCEAAQEGEAKNGEAKAEERQVLLDRMAACDDSRIPREP NALKLEASLRDDSREIREAKYRRIRSEDKGEAKHTVRARDRSPRSVVDAIPPNAYPAEGPSDYH IKSRFRHTNGEQADMRNLEGLNRVNGLEKDRADLLRMLDELRDQVQRSCEITNKPSGSTSTDKA VDASGLYNPRERLSRLRHGSPQLQRSGSQQSPSLNGQAPCIPQAYAPGTAQQDLHGYGEPMAHM GAPSYPVGTYPWRNFDNYFYGQYDPDPLISYHHDGFYHQPACSCLHCYHREFLPVQGPPLGFNH RRVPPYVMNNPRVYPVDGPAMFGTQNYNSRVNASMQRNHMRAAMSKKPAQTCEPIACGAPFTIC YNCYEVLQLPKKSPVPGKDEYKLRCGSCSHALVVKLDGSRLDVSAPSPISHISGGSKISSNDGQ GSNANSAPHERVLPLYSFSAASHGSQDLPSNSSEAEKMQGISSSCSISEDENSPARSNSQRDTP GSRDLHPEAEVSTRVPSLHLRDHFGYSPSEKVVDGSGKGSRSTRSEHEKAVLTESFKQNTVKDV SVVNIMDLSDDEYDDPDYMQDRGDVAQPVDHPRAVKTGDSFFTNLIKKSFKINNGMGNGRAKVF INGYPISDRAVRKAEKIAGPIYPGEYWYDYRAGFWGVMGQSCLGMIPPYIPELNYPMPKKCAAG NTGVFVNGRELHQKDLDLLVGRGLPDSPGRSYRVEMSGKVSDEVSGEELYCLGKLAPTKEELSI *(-) MAACDDSRIPREPNALKLEASLRDDSREIREAKYRRIRSEDKGEAKHTVRARDRSPRSVVDAIP PNAYPAEGPSDYHIKSRFRHTNGEQADMRNLEGLNRVNGLEKDRADLLRMLDELRDQVQRSCEI TNKPSGSTSTDKAVDASGLYNPRERLSRLRHGSPQLQRSGSQQSPSLNGQAPCIPQAYAPGTAQ QDLHGYGEPMAHMGAPSYPVGTYPWRNFDNYFYGQYDPDPLISYHHDGFYHQPACSCLHCYHRE FLPVQGPPLGFNHRRVPPYVMNNPRVYPVDGPAMFGTQNYNSRVNASMQRNHMRAAMSKKPAQT CEPIACGAPFTICYNCYEVLQLPKKSPVPGKDEYKLRCGSCSHALVVKLDGSRLDVSAPSPISH ISGGSKISSNDGQGSNANSAPHERVLPLYSFSAASHGSQDLPSNSSEAEKMQGISSSCSISEDE NSPARSNSQRDTPGSRDLHPEAEVSTRVPSLHLRDHFGYSPSEKVVDGSGKGSRSTRSEHEKAV LTESFKQNTVKDVSVVNIMDLSDDEYDDPDYMQDRGDVAQPVDHPRAVKTGDSFFTNLIKKSFK INNGMGNGRAKVFINGYPISDRAVRKAEKIAGPIYPGEYWYDYRAGFWGVMGQSCLGMIPPYIP ELNYPMPKKCAAGNTGVFVNGRELHQKDLDLLVGRGLPDSPGRSYRVEMSGKVSDEVSGEELYC LGKLAPTKEELSI*(-) |
| Sponge-miRNAs | osa-miR5509 |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | NA |
| Other Information | |
|---|---|
| References | Chu et al., 2017 |