Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os02g0258300_circ_g.1 |
ID in PlantcircBase | osa_circ_014160 |
Alias | NA |
Organism | Oryza sativa |
Position | chr2: 8939137-8941663 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer |
Parent gene | Os02g0258300 |
Parent gene annotation |
Zinc finger, FYVE/PHD-type domain containing protein. (Os02t0258 300-01);Similar to extra-large G-protein-related. (Os02t0258300- 02) |
Parent gene strand | - |
Alternative splicing | NA |
Support reads | 2 |
Tissues | root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Os02t0258300-02:3 Os02t0258300-01:3 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.213517422 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
8941286-8939216(+) 8941560-8939274(+) 8939292-8941644(-) 8941474-8941644(-) |
Potential amino acid sequence |
MASTTDLGDLSLALTVCFASPLSSLRMRRYLASRISLLSSLSEASSFKAFGSLGIRLSSQAAIL SRSTCLSSALASPFLASPSWAASQVSLDAAPLLSGELSSTSRYFTCPPSDFSEEFSDAEFFFGW CKFAETIQLLTRDFIRHFTGHLNSV*(+) MQLLCYLVNSPALQGTSHVHHQISLRNSQMLSSSLVGASLPRQYSSSPETSSDTLPDISTLYDL PGESGSPRPTSKSKSFW*(+) MGENFTRRIWIYLWVEDSQILPVDHTELRCPVKCRMKSLVRSCIVSANLHQPKKNSASENSSEK SDGGHVKYLEVLESSPDNKGAASKDTCEAAQEGEAKNGEAKAEERQVLLDRMAACDDSRIPREP NALKLEASLRDDSREIREAKYRRIRSEDKGEAKHTVRARDRSPRSVVDAIPPNAYPAEGPSDYH IKSRFRHTNGEQADMRNLEGLNRVNGLEKDRADLLRMLDELRDQVQRSCEITNKPSGSTSTDKA VDASGLYNPRERLSRLRHGSPQLQRSGSQQSPSLNGQAPCIPQAYAPGTAQQDLHGYGEPMAHM GAPSYPVGTYPWRNFDNYFYGQYDPDPLISYHHDGFYHQPACSCLHCYHREFLPVQGPPLGFNH RRVPPYVMNNPRVYPVDGPAMFGTQNYNSRVNASMQRNHMRAAMSKKPAQTCEPIACGAPFTIC YNCYEVLQLPKKSPVPGKDEYKLRCGSCSHALVVKLDGSRLDVSAPSPISHISGGSKISSNDGQ GSNANSAPHERVLPLYSFSAASHGSQDLPSNSSEAEKMQGISSSCSISEDENSPARSNSQRDTP GSRDLHPEAEVSTRVPSLHLRDHFGYSPSEKVVDGSGKGSRSTRSEHEKAVLTESFKQNTVKDV SVVNIMDLSDDEYDDPDYMQDRGDVAQPVDHPRAVKTGDSFFTNLIKKSFKINNGMGNGRAKVF INGYPISDRAVRKAEKIAGPIYPGEYWYDYRAGFWGVMGQSCLGMIPPYIPELNYPMPKKCAAG NTGVFVNGRELHQKDLDLLVGRGLPDSPGRSYRVEMSGKVSDEVSGEELYCLGKLAPTKEELSI *(-) MAACDDSRIPREPNALKLEASLRDDSREIREAKYRRIRSEDKGEAKHTVRARDRSPRSVVDAIP PNAYPAEGPSDYHIKSRFRHTNGEQADMRNLEGLNRVNGLEKDRADLLRMLDELRDQVQRSCEI TNKPSGSTSTDKAVDASGLYNPRERLSRLRHGSPQLQRSGSQQSPSLNGQAPCIPQAYAPGTAQ QDLHGYGEPMAHMGAPSYPVGTYPWRNFDNYFYGQYDPDPLISYHHDGFYHQPACSCLHCYHRE FLPVQGPPLGFNHRRVPPYVMNNPRVYPVDGPAMFGTQNYNSRVNASMQRNHMRAAMSKKPAQT CEPIACGAPFTICYNCYEVLQLPKKSPVPGKDEYKLRCGSCSHALVVKLDGSRLDVSAPSPISH ISGGSKISSNDGQGSNANSAPHERVLPLYSFSAASHGSQDLPSNSSEAEKMQGISSSCSISEDE NSPARSNSQRDTPGSRDLHPEAEVSTRVPSLHLRDHFGYSPSEKVVDGSGKGSRSTRSEHEKAV LTESFKQNTVKDVSVVNIMDLSDDEYDDPDYMQDRGDVAQPVDHPRAVKTGDSFFTNLIKKSFK INNGMGNGRAKVFINGYPISDRAVRKAEKIAGPIYPGEYWYDYRAGFWGVMGQSCLGMIPPYIP ELNYPMPKKCAAGNTGVFVNGRELHQKDLDLLVGRGLPDSPGRSYRVEMSGKVSDEVSGEELYC LGKLAPTKEELSI*(-) |
Sponge-miRNAs | osa-miR5509 |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |