Detail information of BGIOSGA015075_circ_g.1


General Information
CircRNA Name BGIOSGA015075_circ_g.1
ID in PlantcircBase osi_circ_014376
Alias Chr04:21971015_21971291(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 19453982-19454244  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA015075
Parent gene annotation NA
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-No
Splicing signals   CT-TA
Number of exons covered BGIOSGA015075-TA:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AACGCCTGAACCCCCATCCATCATCGTGGAAGAAGGTTGCGCCCTTGCCACTCCGAGAGTAAGA
TGGCTTCCCAGCACGGTCGAGTAAGCTGAACTTGTAggcggcggcggcggcggcggcgttggtg
gtggtggtggtggggttgcggcgacgacatcgatgtcctctgtctgcacctccatgaagaccgt
gaattcgc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGCGGCGGCGGCGGCGGCGGCGTTGGTGGTGGTGGTGGTGGGGTTGCGGCGACGACATCGATGT
CCTCTGTCTGCACCTCCATGAAGACCGTGAATTCGCACATGATCGTGAAGCAATCGTCCTTGAG
ATACTCCGATTTTTCCAGTTGTTCCCTCTTGATGAAACGCCTGAACCCCCATCCATCATCGTGG
AAGAAGGTTGCGCCCTTGCCACTCCGAGAGTAAGATGGCTTCCCAGCACGGTCGAGTAAGCTGA
ACTTGTA
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021