Detail information of Os06g0331300_circ_g.5


General Information
CircRNA Name Os06g0331300_circ_g.5
ID in PlantcircBase osa_circ_042321
Alias NA
Organism Oryza sativa
Position chr6: 13112442-13112596  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRI-long
Parent gene Os06g0331300
Parent gene annotation WD40 repeat domain containing protein. (Os06t0331300-01);Conserv
ed hypothetical protein. (Os06t0331300-02)
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues leaf
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered Os06t0331300-01:1
Os06t0331300-02:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTGTTTATGCACTGACCAGAGGCAACTTTCCCTGAACTATTTCCATGGAGTTCGTGTGCTTCAT
CTGTAGCTGACATatgattgctgtgagatcgaatctcagacttgcaatgccaggatatgggcaa
gagcactttatggggtgttttcttctg
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 155
Transcript exons: 13112442-13112596
ATGATTGCTGTGAGATCGAATCTCAGACTTGCAATGCCAGGATATGGGCAAGAGCACTTTATGG
GGTGTTTTCTTCTGTTGTTTATGCACTGACCAGAGGCAACTTTCCCTGAACTATTTCCATGGAG
TTCGTGTGCTTCATCTGTAGCTGACAT

Genomic sequence ATGATTGCTGTGAGATCGAATCTCAGACTTGCAATGCCAGGATATGGGCAAGAGCACTTTATGG
GGTGTTTTCTTCTGTTGTTTATGCACTGACCAGAGGCAACTTTCCCTGAACTATTTCCATGGAG
TTCGTGTGCTTCATCTGTAGCTGACAT
Conservation Information
Conserved circRNAs NA
PMCS 0.238796828
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References this study