Detail information of BGIOSGA014171_circ_g.2


General Information
CircRNA Name BGIOSGA014171_circ_g.2
ID in PlantcircBase osi_circ_005819
Alias 4:32855331|32858162
Organism Oryza sativa ssp. indica
Position chr4: 32855331-32858162  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA014171
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA014171_circ_g.1 BGIOSGA014171_circ_g.3
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered BGIOSGA014171-TA:8
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATACTGGAAGGCGCTTGTGGAAATCCATCTTGCATTGCTGAGGCAGTTGGAGGTAGCTGAGTCT
GCGAGCTTGGATATTGAATCATAGCATTCCCAACACctgttcctagattttgggggtgaggggg
acatgctgcttttacgtgaatgaagttttctgtaacagaaaaaaaaagtaatggataaattacc
acgcaggg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGTTCCTAGATTTTGGGGGTGAGGGGGACATGCTGCTTTTACGTGAATGAAGTTTTCTGTAAC
AGAAAAAAAAAGTAATGGATAAATTACCACGCAGGGATAACAATTAATACAATACACATTATGA
GAATTTAAGAATGGCATATACCTCCTTTTCGAATTATCAGAAGGCTCATCACTTGAGACACTCT
CTCGATGTGAAGAACTCTCCTTCTTGGTCCGACTTCTTGCACTTGGTGATCTTGACCTTCTACT
GCTATGACTACTTGAGCCCTTTGTAGTTTGCCTCGACCTATCCTCCTTTTCATGTTTCCCTTTC
TCTCTTCTATCTGCAGAATCCCTGCTTTTCTCTCTTACGTCCTTTTGATAATCTTTTCTCTCTC
CTTTTGCATCATCCTGCTTAGAGTTTCCTCTGGAACGGGGTTCCCTTGTATCAGCTCCATGTCT
CACACTCCTGTCAGATCCTTTTTCCTCCTTGAAGCTACCCTTTTTATCAATATTTCCATACATG
CTAGATTTATCATCATCATTATATCTTTTGGAAGAAGATTCGGATTCTTTTCTTCGAACAGCCT
TTGGCTCCTTTACAAAATCTTCCTCATTGCTGCTCTTCCCTAAATGCCCTTGACTGCTCTCCAT
ATTGCTAAAATTTTCAACATTATTGCCTGAAGGTGGAACTTTTCCATTTTGGGAATATCCATGT
GCCTTCTCATCCGGGGTAGGAGCCACATCCTTCGGCTGACTTGATATTTTGGCATCTGAAGGAA
ATTCCCTACTATGTGTGTCATGAACACGTAGCTCTTGTTTAAGTTCTGCACTTGAGTTCCTATG
AGACATTTCATCATTAAATTTACGATCTTCGCCTAATGAAGCATTTTGGACCACAGAATTTCTT
TCATTATGATTTCCATGCTGTTCACCATCAGTGGCTTTTTCACCTATTGATTATTTACTCGAGT
AAATATATTTAAGTGGACAAGTAATGCTCTGCAGGTATTTATTTTAAGAACTTACCTTCTCCTG
GACGAGCTGCGCCAGCTTTAGTTTCAGACGATAAGTTTGAAACTGGAACCTTATCCTCATTATC
ACCCTCATCGTCCTCATCATCTGAATCATAACTAGCAAGGCCAAGAAGAGCGCCTTTAGGGGAA
CTTAACCCAGTACCATCAGAATGATCAGCTGAGCTAACATTGGTTGGCTTAGCAGGGACAACAA
CTTTAGCTGAGACCTTTGGTTTTGATTCTCCCAGACCAGGCCCCTTCACACTAGAAACTCTAGT
GGGCTCATTTGCTGCAATGTAGAAGAAATTATCAGAAATGCAGAATGTCTATTTAAATTTACAA
TTTAGCACATCACTCACGTTCAGCTGATGGATCATCTTCATTCAATACTTTTGTCGCGATCTCA
TCAAAAAGATCATCAGTAACCTGGAAAGTGACAAGAGGATCAAAAACTAAAGAAATGACAGGAC
CTTGTCAGACCTAGCAAAGTAACTGCCAATTCCATGTTAAAAACAAGACCTTTAAGAGAACTTC
AGTTAATACACGCTTAATTTCCTGGTTCATTGCTGCCATCCGGGCTGCTTCAATTTCGTCCTGC
AAATAATTTTAGTCCAGTAAAATTATTACAAATAAAGGCGGCTATACTAGACTATAAAATAGAT
AAAAGAAAATAGAAGGGGATAAAACCAGCACATTGTTCAAATACGTTGTCTAATTATCCACCTA
AAAAAGAACTAAAGGTAGCTTTCCTTTAAAATGGAGTTGCTGTAAGTGCAAATAGCTTCTCAGT
AGCTAGCATATGGCCCCAACATTTCTATATGCTCCAAAAGGCCATGAATCTTTTTTTTTAACAA
ATTAGTGAATTATCTTGTGACCAAAATGAAGTCATATAAGTAGTTTTTAGTAATAGAATAGCAA
ACTGCACCTCATCTTCTTCATCATCATCAGTAGATTTAACTGAATCTACGCTTCTGCTGTCAGC
CTGATCAGAACTTTTAAGTATTTTTTCAGCATCTTCAGATCCCTTGGAGTGGAACTCTGTTGAG
TGTTGCACCGAAGCACTCACTGATGTAGATTTCTTCTTCAAAAGTTCTTCGCGAAGCCAGTTAG
GCACTGGAGGCTGGCCATAATAGAGCGCGGGAATCAGTCAAAGTACTTAGGCACATGAGCAGAC
ACACGCAGGAATCTCAAAAATAAGGGTGGAAGAAAAAAGGAAGAGAAGAACAAAACTTACTTTC
TTTGATCTTTCTGTGACATTAAAAGGAGTGTTTGCATCCACAGGGAATGCTTCTGTCACATTAC
CAACTCCAAATGCTGCAGGTGGAATATAGCTTGAACCAGAAACTGCTCCAAAGAGTGGTGCAGC
ATGAACTGAAGGGTCCATCTGTAAGGTAAAAGTTAATTATCATATCTATGGTGCAGAGGAATCA
TACGGAGTAATAAAATAATAGAATTGAACCTGTGCTGCTTGTGGTGGTACTGAAGCTTGAGGAA
AAAGTACTGTAGTAGATGGAATCCATGATTGCGCTGGTGCTGAATGTGAATCATGATCAGATGC
TGCTATTGGAGCTGCTGGAATATTAGAATTGAAATTTGCTGTTCTGTGCACTGCCATATCAGGA
GCTTTCCTACTATTAAATTCTAAAGGTTGATCACTGGGATCAACTGCAATCTTGGAAGACTGCC
CATCATGCCCAAAATGAGGTTGTTCCAGTGAGGGAGCAATATGCATACTGGAAGGCGCTTGTGG
AAATCCATCTTGCATTGCTGAGGCAGTTGGAGGTAGCTGAGTCTGCGAGCTTGGATATTGAATC
ATAGCATTCCCAACAC
Conservation Information
Conserved circRNAs osa_circ_025802*
PMCS
Functional Information
Coding potential Y
Potential coding position 32855641-32858023(-)
32858150-32858023(-)
Potential amino acid sequence MKRRIGRGKLQRAQVVIAVEGQDHQVQEVGPRRRVLHIERVSQVMSLLIIRKGENFIHVKAACP
PHPQNLGTGVGNAMIQYPSSQTQLPPTASAMQDGFPQAPSSMHIAPSLEQPHFGHDGQSSKIAV
DPSDQPLEFNSRKAPDMAVHRTANFNSNIPAAPIAASDHDSHSAPAQSWIPSTTVLFPQASVPP
QAAQMDPSVHAAPLFGAVSGSSYIPPAAFGVGNVTEAFPVDANTPFNVTERSKKPPVPNWLREE
LLKKKSTSVSASVQHSTEFHSKGSEDAEKILKSSDQADSRSVDSVKSTDDDEEDEDEIEAARMA
AMNQEIKRVLTEVLLKVTDDLFDEIATKVLNEDDPSAEPNEPTRVSSVKGPGLGESKPKVSAKV
VVPAKPTNVSSADHSDGTGLSSPKGALLGLASYDSDDEDDEGDNEDKVPVSNLSSETKAGAARP
GEGEKATDGEQHGNHNERNSVVQNASLGEDRKFNDEMSHRNSSAELKQELRVHDTHSREFPSDA
KISSQPKDVAPTPDEKAHGYSQNGKVPPSGNNVENFSNMESSQGHLGKSSNEEDFVKEPKAVRR
KESESSSKRYNDDDKSSMYGNIDKKGSFKEEKGSDRSVRHGADTREPRSRGNSKQDDAKGERKD
YQKDVREKSRDSADRREKGKHEKEDRSRQTTKGSSSHSSRRSRSPSARSRTKKESSSHRESVSS
DEPSDNSKRRKLHSRKSSMSPSPPKSRNRCWECYDSISKLADSATSNCLSNARWISTSAFQYAY
CSLTGTTSFWA*(-)
MIQYPSSQTQLPPTASAMQDGFPQAPSSMHIAPSLEQPHFGHDGQSSKIAVDPSDQPLEFNSRK
APDMAVHRTANFNSNIPAAPIAASDHDSHSAPAQSWIPSTTVLFPQASVPPQAAQMDPSVHAAP
LFGAVSGSSYIPPAAFGVGNVTEAFPVDANTPFNVTERSKKPPVPNWLREELLKKKSTSVSASV
QHSTEFHSKGSEDAEKILKSSDQADSRSVDSVKSTDDDEEDEDEIEAARMAAMNQEIKRVLTEV
LLKVTDDLFDEIATKVLNEDDPSAEPNEPTRVSSVKGPGLGESKPKVSAKVVVPAKPTNVSSAD
HSDGTGLSSPKGALLGLASYDSDDEDDEGDNEDKVPVSNLSSETKAGAARPGEGEKATDGEQHG
NHNERNSVVQNASLGEDRKFNDEMSHRNSSAELKQELRVHDTHSREFPSDAKISSQPKDVAPTP
DEKAHGYSQNGKVPPSGNNVENFSNMESSQGHLGKSSNEEDFVKEPKAVRRKESESSSKRYNDD
DKSSMYGNIDKKGSFKEEKGSDRSVRHGADTREPRSRGNSKQDDAKGERKDYQKDVREKSRDSA
DRREKGKHEKEDRSRQTTKGSSSHSSRRSRSPSARSRTKKESSSHRESVSSDEPSDNSKRRKLH
SRKSSMSPSPPKSRNRCWECYDSISKLADSATSNCLSNARWISTSAFQYAYCSLTGTTSFWA*(
-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021