Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d038504_circ_g.2 |
ID in PlantcircBase | zma_circ_009135 |
Alias | Zm06circ00091, zma_circ_0002292, GRMZM2G174610_C1 |
Organism | Zea mays |
Position | chr6: 158799178-158799777 JBrowse» |
Reference genome | AGPv4.38 |
Type | e-circRNA |
Identification method | CIRI2, find_circ |
Parent gene | Zm00001d038504 |
Parent gene annotation |
Putative B3 domain-containing protein |
Parent gene strand | - |
Alternative splicing | Zm00001d038504_circ_g.1 |
Support reads | NA |
Tissues | leaf, endosperm, root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Zm00001d038504_T002:3 Zm00001d038504_T001:3 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.253179895 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
158799604-158799179(+) 158799518-158799180(-) |
Potential amino acid sequence |
MEFFQCILFHVLYSYHHCALCHAEKHLVHRT*(+) MVRSHVSSCFWLGLPISFCKNNLPSKEFRMVLEDEEGLEFDAVYIGNRTGLSGGWRGFAMHHNL EEGDSLVFELAEHDKFKFGELDAFLRGTRRSGGRNTEHGREYTGRIPSYEQQQRAFRKAEKLQD SLDPNNPSFVKTMVRSHVSSCFWLGLPISFCKNNLPSKEFRMVLEDEEGLEFDAVYIGNRTGLS GGWRGFAMHHNLEEGDSLVFELAEHDKFKFGELDAFLRGTRRSGGRNTEHGREYTGRIPSYEQQ QRAFRKAEKLQDSLDPNNPSFVKTMVRSHVSSCFWLGLPISFCKNNLPSKEFRMVLEDEEGLEF DAVYIGNRTGLSGGWRGFAMHHNLEEGDSLVFELAEHDKFKFGELDAFLRGTRRSGGRNTEHGR EYTGRIPSYEQQQRAFRKAEKLQDSLDPNNPSFVKTMVRSHVSSCFWLGLPISFCKNNLPSKEF RMVLEDEEGLEFDAVYIGNRTGLSGGWRGFAMHHNLEEGDSLVFELAEHDKFK(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Han et al., 2020; Ma et al., 2021b;Zhang et al., 2019 |