Detail information of Os06g0289900_circ_g.1


General Information
CircRNA Name Os06g0289900_circ_g.1
ID in PlantcircBase osa_circ_030576
Alias NA
Organism Oryza sativa
Position chr6: 10588711-10588869  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method circRNA_finder
Parent gene Os06g0289900
Parent gene annotation UDP-glucuronosyl/UDP-glucosyltransferase family protein. (Os06t0
289900-01)
Parent gene strand -
Alternative splicing Os06g0289900_circ_g.2
Support reads 2
Tissues pistil
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered Os06t0289900-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCACCGCGTCCTGGTCCACCCACGCCTTGGTCACCACGCCGCGCCCCCGCACGCGCTCCAGGAA
CCCGTCGCCGAGCACcggcacgccggccgtcgccgcctcgatcaccgagttccacccgctgtgg
ctcaggaacaggcccaccgccgggtccctga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CGGCACGCCGGCCGTCGCCGCCTCGATCACCGAGTTCCACCCGCTGTGGCTCAGGAACAGGCCC
ACCGCCGGGTCCCTGAGCACCGCGTCCTGGTCCACCCACGCCTTGGTCACCACGCCGCGCCCCC
GCACGCGCTCCAGGAACCCGTCGCCGAGCAC
Conservation Information
Conserved circRNAs NA
PMCS 0.292214465
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017