Plant Circular RNA Database

Detail information of Zm00001d034964_circ_g.1

			
				
						 General Information
					

				
						CircRNA Name
						Zm00001d034964_circ_g.1
					

						ID in PlantcircBase
						zma_circ_008863
					

						Alias
						zma_circ_0002447
					

						Organism
						
							Zea mays						
					

						Position
						
							chr6: 173524-174795  JBrowse»						
					

						Reference genome
						
							AGPv4.38						
					

						Type  
						
							u-circRNA							
									
								

					

						Identification method
						find_circ
					

						Parent gene
						
							Zm00001d034964						
					

						Parent gene annotation
						
							ENHANCER OF AG-4 protein 2
							
					

						Parent gene strand
						-
					

						Alternative splicing
						
							NA						
					

						Support reads
						NA
					

						Tissues
						leaf, root
					

						Exon boundary  
						
							No-No							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

					

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

					

						Number of exons covered
						Zm00001d034964_T081:2
Zm00001d034964_T017:2
Zm00001d034964_T088:2
Zm00001d034964_T035:2
Zm00001d034964_T059:2
Zm00001d034964_T022:2
Zm00001d034964_T057:2
Zm00001d034964_T055:2
Zm00001d034964_T001:2
Zm00001d034964_T094:2
Zm00001d034964_T021:2
Zm00001d034964_T083:2
Zm00001d034964_T002:2
Zm00001d034964_T065:2
Zm00001d034964_T025:2
Zm00001d034964_T007:2
Zm00001d034964_T089:2
Zm00001d034964_T074:2
Zm00001d034964_T027:2
Zm00001d034964_T029:2
Zm00001d034964_T048:2
Zm00001d034964_T050:2
Zm00001d034964_T054:2
Zm00001d034964_T052:2
Zm00001d034964_T015:2
Zm00001d034964_T023:2
Zm00001d034964_T073:2
Zm00001d034964_T012:2
Zm00001d034964_T034:2
Zm00001d034964_T008:2
Zm00001d034964_T032:2
Zm00001d034964_T003:2
Zm00001d034964_T086:2
Zm00001d034964_T030:2
Zm00001d034964_T019:2
Zm00001d034964_T026:2
Zm00001d034964_T076:2
Zm00001d034964_T080:2
Zm00001d034964_T064:1
Zm00001d034964_T031:2
Zm00001d034964_T011:2
Zm00001d034964_T024:2
Zm00001d034964_T069:2
Zm00001d034964_T033:2
Zm00001d034964_T070:2
Zm00001d034964_T036:2
Zm00001d034964_T071:2
Zm00001d034964_T028:2
Zm00001d034964_T077:2
Zm00001d034964_T063:2

					

			
		

General Information
CircRNA Name	Zm00001d034964_circ_g.1
ID in PlantcircBase	zma_circ_008863
Alias	zma_circ_0002447
Organism	Zea mays
Position	chr6: 173524-174795 JBrowse»
Reference genome	AGPv4.38
Type	u-circRNA
Identification method	find_circ
Parent gene	Zm00001d034964
Parent gene annotation	ENHANCER OF AG-4 protein 2
Parent gene strand	-
Alternative splicing	NA
Support reads	NA
Tissues	leaf, root
Exon boundary	No-No "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Zm00001d034964_T081:2 Zm00001d034964_T017:2 Zm00001d034964_T088:2 Zm00001d034964_T035:2 Zm00001d034964_T059:2 Zm00001d034964_T022:2 Zm00001d034964_T057:2 Zm00001d034964_T055:2 Zm00001d034964_T001:2 Zm00001d034964_T094:2 Zm00001d034964_T021:2 Zm00001d034964_T083:2 Zm00001d034964_T002:2 Zm00001d034964_T065:2 Zm00001d034964_T025:2 Zm00001d034964_T007:2 Zm00001d034964_T089:2 Zm00001d034964_T074:2 Zm00001d034964_T027:2 Zm00001d034964_T029:2 Zm00001d034964_T048:2 Zm00001d034964_T050:2 Zm00001d034964_T054:2 Zm00001d034964_T052:2 Zm00001d034964_T015:2 Zm00001d034964_T023:2 Zm00001d034964_T073:2 Zm00001d034964_T012:2 Zm00001d034964_T034:2 Zm00001d034964_T008:2 Zm00001d034964_T032:2 Zm00001d034964_T003:2 Zm00001d034964_T086:2 Zm00001d034964_T030:2 Zm00001d034964_T019:2 Zm00001d034964_T026:2 Zm00001d034964_T076:2 Zm00001d034964_T080:2 Zm00001d034964_T064:1 Zm00001d034964_T031:2 Zm00001d034964_T011:2 Zm00001d034964_T024:2 Zm00001d034964_T069:2 Zm00001d034964_T033:2 Zm00001d034964_T070:2 Zm00001d034964_T036:2 Zm00001d034964_T071:2 Zm00001d034964_T028:2 Zm00001d034964_T077:2 Zm00001d034964_T063:2

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
						 Sequences
					
						Splice junction sequence  
						
							GGATCGTCTACAGAACGTTCAGCACGGGATGGTCGCTTCAACATTAAAGTAGTGCTAGTATCAT
CATTTGGCACCTCAATGTCGCCCATGTACTTCCGGAgtggtggtgaatctgacggaagcggtgg
agggccatcgggtagagagggaaagtcattctggtcaattgcctgctctgaacctggatcttga
atagagtc

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

						Full-length trsnacripts
						
							NA						
					
						Genomic sequence
						
							GTGGTGGTGAATCTGACGGAAGCGGTGGAGGGCCATCGGGTAGAGAGGGAAAGTCATTCTGGTC
AATTGCCTGCTCTGAACCTGGATCTTGAATAGAGTCGTGTTCAATAAGGACAGCTCCATCAGTC
TGTTGTTTGTTGCCTGGTAACTCTAAAGCATCTTCCATAGCAGCATCAGTAGTTACATTCTCTA
CTATAATAATGTGTTCCTCAACATATACTGGAGCAATAGTATCTTCAGTTTTTCGTATGACATC
ATTTTCAACAGGCCGTGCCTGTGAAACAAATGGTGATGACCCATTATTTTTAGGGAAGTCTTCA
TCATCTTCAAACACTTTTGATGATAAAATTCCAGAAAGCTCAAAAGTTGCATTGCTGAGAACAG
AAAAACCAAGAAACATACATCAAAATAATGCCTGGTAAGTTGGATAAAGATAATACGACACAGA
GGCACACAAAAGTACTGGGAACTCTGATTTATAAGAAAAACAAAAACAAAAGATGGTCAGGAAA
GCATCAGATATGGGGAGTTACTTCATTAGTTCGAAGCATGTCATTACTTCATAATAGCAAGTTC
ACTGAGCTTCATACTAAAATCCACAAACTTTGGAACATAAGCACCCTGGTCATGTAAGACTACC
TTAGCATAAGCCGTATTTTGAAGATCTTAATAGCAGGGATTAATGTAGTCATTAGTCAAAGCAT
TTGACATTACCATAGCCTATTTTAGGTTCCACAACACAACATAACAACTTTATTCTAAGATATT
GATACAAATAAAGCCATGCATACGTGTGGTAGGTACTGGCACTGATGTGTTTCTTGAGTTCTTT
AAACTGATGATAGAAAACATCAACTTAGTGCATGTGAACTTGTGAAACTGCATCATATGTGCCA
ATTCCAATATGGGACTGGCATGATTATTACTCCCCGGCATATTCTAACCAAGGGAACCTGAAAT
GTAGGTTTAAGCTATTTATCCGGTCATGATATACTAACATTATAAAAAAACTGTTAAAGGTTCA
AAATACTGACCATATGGATCCACCAGAAGTTATATCTCAAGCTAGAAAAATAAAAACAGTAAAA
TGATGTATTGATCTAGTAAATGGTATATCAAGTCCACAATACCTTCCATATTCATCAACAAGCA
TGTCATCCATCTCCCTAATAGGATCGTCTACAGAACGTTCAGCACGGGATGGTCGCTTCAACAT
TAAAGTAGTGCTAGTATCATCATTTGGCACCTCAATGTCGCCCATGTACTTCCGGA

Sequences
Splice junction sequence	GGATCGTCTACAGAACGTTCAGCACGGGATGGTCGCTTCAACATTAAAGTAGTGCTAGTATCAT CATTTGGCACCTCAATGTCGCCCATGTACTTCCGGAgtggtggtgaatctgacggaagcggtgg agggccatcgggtagagagggaaagtcattctggtcaattgcctgctctgaacctggatcttga atagagtc
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	GTGGTGGTGAATCTGACGGAAGCGGTGGAGGGCCATCGGGTAGAGAGGGAAAGTCATTCTGGTC AATTGCCTGCTCTGAACCTGGATCTTGAATAGAGTCGTGTTCAATAAGGACAGCTCCATCAGTC TGTTGTTTGTTGCCTGGTAACTCTAAAGCATCTTCCATAGCAGCATCAGTAGTTACATTCTCTA CTATAATAATGTGTTCCTCAACATATACTGGAGCAATAGTATCTTCAGTTTTTCGTATGACATC ATTTTCAACAGGCCGTGCCTGTGAAACAAATGGTGATGACCCATTATTTTTAGGGAAGTCTTCA TCATCTTCAAACACTTTTGATGATAAAATTCCAGAAAGCTCAAAAGTTGCATTGCTGAGAACAG AAAAACCAAGAAACATACATCAAAATAATGCCTGGTAAGTTGGATAAAGATAATACGACACAGA GGCACACAAAAGTACTGGGAACTCTGATTTATAAGAAAAACAAAAACAAAAGATGGTCAGGAAA GCATCAGATATGGGGAGTTACTTCATTAGTTCGAAGCATGTCATTACTTCATAATAGCAAGTTC ACTGAGCTTCATACTAAAATCCACAAACTTTGGAACATAAGCACCCTGGTCATGTAAGACTACC TTAGCATAAGCCGTATTTTGAAGATCTTAATAGCAGGGATTAATGTAGTCATTAGTCAAAGCAT TTGACATTACCATAGCCTATTTTAGGTTCCACAACACAACATAACAACTTTATTCTAAGATATT GATACAAATAAAGCCATGCATACGTGTGGTAGGTACTGGCACTGATGTGTTTCTTGAGTTCTTT AAACTGATGATAGAAAACATCAACTTAGTGCATGTGAACTTGTGAAACTGCATCATATGTGCCA ATTCCAATATGGGACTGGCATGATTATTACTCCCCGGCATATTCTAACCAAGGGAACCTGAAAT GTAGGTTTAAGCTATTTATCCGGTCATGATATACTAACATTATAAAAAAACTGTTAAAGGTTCA AAATACTGACCATATGGATCCACCAGAAGTTATATCTCAAGCTAGAAAAATAAAAACAGTAAAA TGATGTATTGATCTAGTAAATGGTATATCAAGTCCACAATACCTTCCATATTCATCAACAAGCA TGTCATCCATCTCCCTAATAGGATCGTCTACAGAACGTTCAGCACGGGATGGTCGCTTCAACAT TAAAGTAGTGCTAGTATCATCATTTGGCACCTCAATGTCGCCCATGTACTTCCGGA

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.127030418

Conservation Information
Conserved circRNAs	NA
PMCS	0.127030418

			
						 Functional Information
					
						Coding potential
						N
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	N
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Ma et al., 2021b

circRNA

Detail information of Zm00001d034964_circ_g.1

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