Detail information of AT2G04842_circ_g.1


General Information
CircRNA Name AT2G04842_circ_g.1
ID in PlantcircBase ath_circ_012812
Alias 2:1698809-1699009
Organism Arabidpsis thaliana
Position chr2: 1698809-1699009  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ; CIRI2
Parent gene AT2G04842
Parent gene annotation Threonine--tRNA ligase, chloroplastic/mitochondrial 2
Parent gene strand -
Alternative splicing NA
Support reads 2
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT2G04842.2:1
AT2G04842.1:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATGATCCTAAAACCGCTCTGTGGATCATTATAGGACGTTTCTTATCTGAGTTTGTGTCTACATA
GGTAATGTCAAATCTCTGAGGAAGATTGAAGTCGACctgattgtctgtgacaggtaagacccgg
acttgaacaggagagagccataacgggaaatcccctgcgtagtgttctatgagaacaccgaaaa
atctttct
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 201
Transcript exons: 1698809-1699009
CTGATTGTCTGTGACAGGTAAGACCCGGACTTGAACAGGAGAGAGCCATAACGGGAAATCCCCT
GCGTAGTGTTCTATGAGAACACCGAAAAATCTTTCTAATGATCCTAAAACCGCTCTGTGGATCA
TTATAGGACGTTTCTTATCTGAGTTTGTGTCTACATAGGTAATGTCAAATCTCTGAGGAAGATT
GAAGTCGAC

Genomic sequence CTGATTGTCTGTGACAGGTAAGACCCGGACTTGAACAGGAGAGAGCCATAACGGGAAATCCCCT
GCGTAGTGTTCTATGAGAACACCGAAAAATCTTTCTAATGATCCTAAAACCGCTCTGTGGATCA
TTATAGGACGTTTCTTATCTGAGTTTGTGTCTACATAGGTAATGTCAAATCTCTGAGGAAGATT
GAAGTCGAC
Conservation Information
Conserved circRNAs NA
PMCS 0.287829013
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020