Detail information of AT1G44575_circ_g.7


General Information
CircRNA Name AT1G44575_circ_g.7
ID in PlantcircBase ath_circ_006017
Alias NA
Organism Arabidpsis thaliana
Position chr1: 16872044-16872157  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method PcircRNA_finder
Parent gene AT1G44575
Parent gene annotation Photosystem II 22 kDa protein, chloroplastic
Parent gene strand +
Alternative splicing AT1G44575_circ_g.1 AT1G44575_circ_g.2 AT1G44575_circ_g.3 AT1G44575_circ_g.4 AT1G44575_circ_g.5 AT1G44575_circ_g.6 AT1G44575_circ_g.8 AT1G44575_circ_g.9 AT1G44575_circ_g.10 AT1G44575_circ_g.11
Support reads 1
Tissues whole_plant
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT1G44575.2:1
AT1G44575.1:1
AT1G44575.3:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGTTTCACAAAGGCGAATGAGCTATTCGTTGGTCGTGTTGCTATGATCGGTTTCGCTgttgaga
agccgaagagcaaggttgaggatggcatctttggaacgtctggtgggatt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTTGAGAAGCCGAAGAGCAAGGTTGAGGATGGCATCTTTGGAACGTCTGGTGGGATTGGTTTCA
CAAAGGCGAATGAGCTATTCGTTGGTCGTGTTGCTATGATCGGTTTCGCT
Conservation Information
Conserved circRNAs NA
PMCS 0.153508333
Functional Information
Coding potential Y
Potential coding position 16872143-16872154(+)
16872079-16872046(-)
Potential amino acid sequence MIGFAVEKPKSKVEDGIFGTSGGIGFTKANELFVGRVAMIGFAVEKPKSKVEDGIFGTSGGIGF
TKANELFVGRVAMIGFAVEKPKSKVEDGIFGTSGGIGFTKANELFVGRVAMIGFA(+)
MPSSTLLFGFSTAKPIIATRPTNSSFAFVKPIPPDVPKMPSSTLLFGFSTAKPIIATRPTNSSF
AFVKPIPPDVPKMPSSTLLFGFSTAKPIIATRPTNSSFAFVKPIPPDVPKMPSSTLLFGFS(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017