Detail information of 3_circ_ag.10


General Information
CircRNA Name 3_circ_ag.10
ID in PlantcircBase ath_circ_020104
Alias NA
Organism Arabidpsis thaliana
Position chr3: 2070392-2074893  JBrowse»
Reference genome TAIR10.38
Type   ag-circRNA
Identification method CIRI
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing 3_circ_ag.7 3_circ_ag.8 AT3G06620_circ_g.1 3_circ_ag.2 AT3G06620_circ_g.3 3_circ_ag.4 AT3G06620_circ_g.5 AT3G06620_circ_g.6 3_circ_ag.7 3_circ_ag.8 3_circ_ag.9 3_circ_ag.11 AT3G06640_circ_g.1
Support reads 2
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TAACGCAGCACGAGTCGCTTGGAACTGTATTGTATACTTTCTTTGCAGGTCTCTTAGTCTCTCC
ATCAGTTCTTGGAATGTGGGTCTCAGCTTTGCATCCctgtgccaacagctctctattaatgaga
tccaatcaggatcagtgtcctttggaatttccagcctctggttcatgaaccccacagctccgat
cacctgca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGTGCCAACAGCTCTCTATTAATGAGATCCAATCAGGATCAGTGTCCTTTGGAATTTCCAGCC
TCTGGTTCATGAACCCCACAGCTCCGATCACCTGCAGGTATTTCAAAGTGTATGTGTGTAACAG
CACAATTCACTTGTTTACACATTACAGTAAGTATAATGGTGTTTATGATTCATACCTTCCTAAT
TAGTACAATTTATTTATAGTCACCTGAAACTAGATGGATTTTTAATAGAGGTTTACCCTGAAAC
CAATCTTTTGGCATAGAGATTCTTATTATTTGTCAGCTTCATTGATAGAGCAAAACATGTAAGT
TTTGACCAAATATGTGATTTCTAGGAACAATTGTAAGTGAAAACACTTTCATTGTTCTATCGCT
CAGAAAGATACCTGCATCGAGTTGAGATTTTCCCATGGGATCTTCTCTGTGGCAAGCTCCCATA
ATACTACTCCAAAGCTATAAATGTCAGACCTGTCTCAAAGAAATGGAGCTAGTTAGCGATTGAG
GCTAGAAAAACAAGTAATCTGGGAATTTAACCAAACAGAACACGAGAATATACTTCTCATCAGC
AGACTCATTTCGAAGAACTTCAGGTGCCATCCATTGAGGCTGCATTACAAGTGAAAAGCCAAGC
AAGATCATTTCGGGAGGTTGACTATAAATCCGGATTCAAATCGAAAAGAGTAGTCCAGTACCGT
TCCCTTTCCCGACTTGCTAGTTAGGTATGTCTGATGCTTAATACGCGAAAGACCAAAGTCAGCT
ACCTGTTATAGATATCACTGTAAGTTGACGATGTTTCTAGTTCCAGTTTGGAGACCATTTAAAT
AAGAAGATAATTTGTACCGAAATCTTTATTTTAGTTTTAGAAAGATTAAGGAAAACCAAACTCA
TTCAAGATGACCTGTTACCTTAACGGTCCAGTTCCTGTCTACCAGCAAATTTGACGACTTCAGA
TCACGGTGGATGATGGGTGGACTACAACAGTGAAGATAATTCATACCGCGAGCCTGTTTGAAGA
ATCATGTAATATGGTGTATGAGATGTACGGTGACCGAGTCAAATAGAGTTAACAAGAAGATTTA
CAAGAAAAATACAAACAAGTAGTCACATAGAGCAACTCATAATTAAATGTCTAATGAACATATA
ACTAATACTCACAATGTCCAAGGCCATGTTGATACGTCGCCTCCAATCAAGTTTCGACATACTT
CTCTGCAGTAGACGGAAGAGACTTCCACTGAAAATTATAATTCAAATGATTAGGAGCTATGACG
TGAAAGTCCAACAACACAAAGAAAGAAAAGAGATGAGAGCGAACCGTGGAACGAACTCTGACAC
TATACAGAGACGCTGGGGTGAAGTCACAGCTCCCATAAACAGCAGAACGTTAGGATGTCGAAGT
CTTTTCATCAGCGATACCTTCAAAGTAAAAGTAAGAACAATATAATAACTTGAATGTTTGGATG
TTCTACTAAAAACCAATGAAAATATCAACTGTCTTTTGCCAAAACTACACTCAGAGCAATCATT
ATGGATAAAAGATCAAAACCAGTACCTCTTTTTCAAAAGACTTTATGACTGATTCTGAATATTC
TTGTTTGGAGAACACTTTCACAGCTACATCCTGCGGTGACATTAGCAACTCTCAATAAGAAAGA
TATCTGAACTTGAATTTTATTTTACCATGGAAGCGTGAATAAATCAACAAATGTAGATTCTACA
ATATCGCCAGGAGCTAAAACGTACAGATCCAAACCAGATACCGTGATAGACAGTTCCACATGAA
CCTGTACAATGGAAAATTATTGGAGCATTTTAGCTAAACAGACACAGAAAATCACATATATTAG
TAACATGTATGATGTTATAAAGAATGGACTGGCAACGAGATAATCTGTTTATGAAGTAAACTAC
CTCGTCCAATTTGTTCCCCGATTGTCAAATCATCCCATAAAATTTCATGTTCCAAGGGATCGCT
ATCTATATCAACCTTGTCCATAACACTCCTACTGGTACTGCCGCAACTACTAGCGCTGTTTGTG
CTGTTTGCATTTATAGAGGAAGACCACATATTAGAAGCTTCGTCATCAGTAGGCTTATTACTTT
CAGAGCCATGGCTTTCAGACTTAACACCAGCAGAGGGATAAATCTGGTGGTACTTATCTTTCTC
TTGTTCATTTTCTACCCAAGACCATACAGAATGAGTAGGCCTTACTCTTGAACCTTCTTGCTCA
TTCCCTTTCCATGGACGTGACAAACCTTTCTTTACCATCCATTCTTCAGCTTTTGAGGTGGGAA
CCTTATGGATTGCAGGCTTTCTATCACTGGAATCTTTGGAGGGTTTTGAAGGAAACTTGTCATC
GTAACATGTGAAAACACCAAAAGGAGATTGGATAAAATCCCCTCTTGGTGTGCTAGCACCACTT
GACGCTGCGTCGTCCCTGTGGTCAGAGAGAGTATCACCGAATACATCATGATCTGAATGATGAC
TATCCCCACAGGCACTGTTATCACCTGCTCGCATTTTTGACCTGACTTTGTTGCTCAACTTGGA
TGCCTGCAAATTTGACACTAGTCAAAATATGCAAACAGTAAGATAAAAAAGGTCAGAATATGCA
ACATCCAATTGAACTAACCAAACTTGATATCTTTGATGCTATAGAAACTTGTATAGGCTGATCA
GAGTCGAGGCCAGGTTTCGATATAACAGCTCCTTTGGAGTCCAAACCAAGTTTCCTCTCAGGTT
CTTGCGGCTTCAATCTAGGCAAAGAGAGTCTCGGGTTGAGATAGGGTGCAATGTCACTTGTGAT
AGAAATGATACCAACAACAGTGCCGTTATCATCATAAAAGGGAGAACACGTAGTGACAGCTGAA
AAGATCTTTCCTGATTTGGTCTTGACAGGAAACTCCCCTGTCCAGCTTTCTCCATTGGCACAAC
GTCGAGCAACATTCAAGGCAAAGGCAGCATTCTGATCATCTACAATAACATGTACTGGGTTCCG
CCCAACTACTTCTGCAGCAGAGTACCCATAAAGCTTTTCCGACATGGCATTCCTGAGAACAATC
ATGTCACCATAATCATAACGATTGACTATACAATTCCAAAAAAAAAAAAAAGAAGTACTAACCA
AAAGATAATTCGCGTATTGAGATCTAAGACATGAACAGACTGAGCCAACGACTGCAAAATATTC
AAATACTGTTTATCAGTGAACTTCCCGGGCGATGGATTCGAATTCATCGATCCCTGGATACGTC
TCAACGGCCGACGCGGCAACACCGGATGCGACGGCTGCCTAAGCTCCGTGGAGAGCTTGAGCCT
AGACATCTCCTGCTTTAGAAGCTCCTGACTTTGCTCTAGCTCAAGCATCTTCTTGAGCAGCTCC
TCCTCCATTGCGCTCCAGGAAAAAAACGGAAACCCTCAGGTGGATTTCGAAATCTGAAGAGCTA
ATAACCGGGAATCGTATGGTCGAAAAAGAGAGTGATTAGATTTGACTATGGAGAAGGATTGATG
ACTCATGACTGTCTCTCTCGCTCCCAACCAAAGTTTCCTCTCTCGAGAAAAGTGTAATTTAAGA
AAAAAATTGACTCCCGAGAAACCATGAGTCCATGATACTGACTGTAGTGTAACGTATGAAAGAT
GCTAGTATTCTACATCCTTCCTTTTTGTTTGTATGTATTGTTCCCTCATAATCCGATCTCGCCG
CTACACCGCTTCCAACTTCTAATATTGTACTTTAATGTACATCGGCTGCAATATCAGTGTAACT
AACTCACTCACCTCTTTTTTAAATTGAAATCATATTTTATTTTTCTTCTTGTATTTTCTTGGTT
TCATTAAAAAGAAAAAAAGAAAGCTTGATACATTATTCAAGATCTAATTTACATCTGATTACGT
AGACAAAAATTTATTAAAGCCTCATCTTAAATTTGGAATGAAGTGATACTTAACCACCATGGCC
GGAGACGCACTGGTCAGTACAAAGCATTATGCATATCTGATCAAAGTGTCAGAAAGCAGAGTCA
AGCTCACTAGTTTATAGTTTTCAACATTGGTGTAAAAACATAGAAATATGAGCACATATGACCA
ACCTCAATGATTTTGTTTCAGTACCTGGGAAGACTCCGTTCGAACCATAGTCAACCAACCTTCA
TGATATTTTCAATGCCATAACCTTGTTCAATGGTGGAAGACATTGGCACACCAGCACAGCATGT
TTCCACCAATTGTTGTTGTTCAAAAAGACCAACTCTCTCTTTCTCTCTTTCTTTGTTTCTGTGA
ACAATAGTTGGATCTTGAAGCGATGCGGCGTTGAGGAACAAGAAGCCATAAGTGAAAAGGGTCA
ACTTTTGTTTGGTTTAGTTGTCCTTGAGAAGAGAGTTGTCACTTGTCAGATAACGCAGCACGAG
TCGCTTGGAACTGTATTGTATACTTTCTTTGCAGGTCTCTTAGTCTCTCCATCAGTTCTTGGAA
TGTGGGTCTCAGCTTTGCATCC
Conservation Information
Conserved circRNAs NA
PMCS 0.518127736
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017