Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT1G21080_circ_g.5 |
ID in PlantcircBase | ath_circ_003708 |
Alias | NA |
Organism | Arabidpsis thaliana |
Position | chr1: 7381805-7381864 JBrowse» |
Reference genome | TAIR10.38 |
Type | u-circRNA |
Identification method | PcircRNA_finder |
Parent gene | AT1G21080 |
Parent gene annotation |
DNAJ heat shock N-terminal domain-containing protein |
Parent gene strand | - |
Alternative splicing | NA |
Support reads | 1 |
Tissues | whole_plant |
Exon boundary | Yes-Yes |
Splicing signals | CT-GC |
Number of exons covered | AT1G21080.3:1 AT1G21080.2:1 AT1G21080.1:1 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.283336944 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
7381834-7381807(-) 7381814-7381861(+) |
Potential amino acid sequence |
MILRLLIISRHAKCIQIKTLMILRLLIISRHAKCIQIKTLMILRLLIISRHAKCIQIKTLMILR LLIIS(-) MSSLRIIRVFIWMHLACLEIMSSLRIIRVFIWMHLACLEIMSSLRIIRVFIWMHLACLEIMSSL RIIRVFIWMHLAC(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |