Detail information of AT5G66810_circ_g.2


General Information
CircRNA Name AT5G66810_circ_g.2
ID in PlantcircBase ath_circ_046222
Alias NA
Organism Arabidpsis thaliana
Position chr5: 26673794-26676255  JBrowse»
Reference genome TAIR10.38
Type   ue-circRNA
Identification method CIRCexplorer
Parent gene AT5G66810
Parent gene annotation CTLH, C-terminal LisH motif (InterPro:IPR006595)
Parent gene strand +
Alternative splicing AT5G66810_circ_g.1 AT5G66810_circ_g.3 AT5G66810_circ_g.4 AT5G66810_circ_g.5
Support reads 3
Tissues seedlings
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT5G66810.4:7
AT5G66810.2:7
AT5G66810.1:8
AT5G66810.3:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CATGACATCAGAAGATGGTGGAAGCAGCAGCTTGATGATGATGACTCAGACTTTGCCAAGAGAA
GCTTTGTGGGAAGAAAGTGCAATTCTTAAAGTAATGgaagcttatgaggaattcaagcatgttc
ttcttgcactcatctatgataaagatgaccaaacctctccagtagcaaacgaggtatgccatgt
ttctgcag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GAAGCTTATGAGGAATTCAAGCATGTTCTTCTTGCACTCATCTATGATAAAGATGACCAAACCT
CTCCAGTAGCAAACGAGGTATGCCATGTTTCTGCAGCTTTTTTGTTTATTTTGTTTTTTCTTAG
AATGTTATCTGATCTTGCGGACACAGAATGTCCTATGTTTATTTTTTGAACTGCTGCTATACAT
CATGCAGAATTTGTATTTTGGATTATAAGGAATTGCGCTTTCTGTTCTTCAGTGGGCAGAGAAA
AGAAGGTATGAAATGGCTGGACTGATGTCATCTGTCTTACGAGCTTCTTTGCAAGCATATGATC
CAGTATTTTCTATGACACTAAGATATCTGATAAGGTAAGGCTAAGTTCGTTTTTCAACTCTCTT
GTTATTGGTTGTGTTCTTTTTCGCTTACTCTGATTAATCCCTTGTTCTACCTTTACCAGCATAC
ACAAAGGATTTTGCTTTCACCAAGGAATTTCTTCCGCAGTTTCTGATCTAACCCACAGATTGCT
CCTGGAGGAACGTGATGCACCAGCCACGCCTATTGAAAGCATGTATGAAGTACCACCGTTTGAT
GAGGTAACATGGCACTTAGCTTCTTGATCATCTTGTAATTTAAATGTGATTGTATCTATAACAC
GCATTGTACTGAATTTTTATATCAAATTTCAGGTGGATATACAGGCTCTTGCTCATGCGGTTGA
GCTCACTAGACAAGGTGCTGTTGATAGTATGAAATTTGCCAAAGGTGACCTTTTCCAGGCATTC
CAGGTTTCAATCCCCTCCATTTCTTTATACATTCTATGCATTGTCATCAATCCTCACCATCCCT
TTGCTGTTAAAATACAATGTCATGCGAAAACTTTAGTTTGCGCTTAATTTGTATACTGTAGTTA
CTTACTATTATCGTGGTTTAATTTTATATATCTGCACTGCAACCTAATTCGTGCTTCTACTTAT
TGCAGAATGAATTGTGCAGGATGCGATTAGATGTTTCTGTTCTTGATGAACTTGTTAAGGAGTA
CTGCATATACAGGGGTATTGTGGATTCAGGTTGGTGATCAAGCTCTAGGCAGTTTCAAGATCCT
ATTCATTATTCTACCACTTTTTCTTTTTTGGCATTCATCAATTTCTGATCGTTTTAATCTTCAA
TCAGAGATGCAAATGATCACGATTCCTGCCAAACGCAACCAATCGGAGGTGGGCCGCAGCTTAT
CAAGAGATTGTTCTTCGGAAATAGATCTCAACACAAGTCAACATTCAGATATTGAGAATTATAG
CAACAAGAGCATGCTCGATGGCTCACTCACATATGACACTGAAATGTCTTGCGAAGAAGGAGGT
GACGTTGGCACACGTTATGGCAGTGAACCAACCAGTGTTTGTGAAGATTGCAGCACTAGCTGGT
CAAATCAATGTGAAAATACAAGAGCTCTTCTTAGAATTAGATCCCATATGAATAGTGAGGGGAA
TAAACGCAAAAGATGGTGTGGGCGTACTGCTGAAATGGATTGTCTTCCTCGTATTTCATTTGCC
AATTCCGAGTCAGGCACAAACCCTATAGAGGACAAGTATGAGATAGCGTTGGCACTGAAGGAAT
TGGTTAGCAGAGGAATGGCAGCAGAAGCATTTTCCGAAATCAGCACCATGGATCCAGATTTTTT
CACACAAAATCCGGGTTTACTTTTCCACCTTAAGCAGGTAATGGTGCAAGAACAACTTAAAGCT
CTCGGTATATTCCCCCCAAGAGATATTGTTTGTAACTTCTTCGTTTTGCACAGTAACGGAGGAA
CTTGTTTATATATATATATATATAAATGTACAGGTCGAATTTCTGAAGCTGGTGAGTGCTGGTG
ATCACAATGGAGCCCTAAAGGTCGCATGCTTTCACTTAGGTCCCTTAGCCGCCAATGACCAGTC
TTTACTGAAGACATTGAAGGAGACTTTGTTAGTTTTACTCCAACCCGACGGAACCGCACCTGGG
AAAGATTTGCCTTTGAATGATCTGGCAAATACGCTACAGGTAACAATGTTTTTAGTTTTGATCT
CTTCTTCTGGTTTTGTCTCAGATGAAAGATGGAACACACAACTGGTGTTTGTTTTTGCCATTCT
TTTTTAAGGTTTCTGTCGGTAATAGGCTCGGGATCGAAGAACCGAAGTTAATGAAAATAATCAA
AGCGACGCTTCACACGCATACCGAGTGGTTTAAGCTTCAGATGTGTAAAGACCGGTTCAATAAT
CTCCTGAAGATAGATTCTTTGAAAGAAGTGAACACCGATTTGATTGGTGCTATTAAATCAAAAT
CAAAGAAAGATAGCAACACAAACTTGTCTTCTCAAGTCACGACGACGTCTTCAAGCACCATGAC
ATCAGAAGATGGTGGAAGCAGCAGCTTGATGATGATGACTCAGACTTTGCCAAGAGAAGCTTTG
TGGGAAGAAAGTGCAATTCTTAAAGTAATG
Conservation Information
Conserved circRNAs NA
PMCS 0.145344354
Functional Information
Coding potential Y
Potential coding position 26674062-26676252(+)
Potential amino acid sequence MAGLMSSVLRASLQAYDPVFSMTLRYLISIHKGFCFHQGISSAVSDLTHRLLLEERDAPATPIE
SMYEVPPFDEVDIQALAHAVELTRQGAVDSMKFAKGDLFQAFQNELCRMRLDVSVLDELVKEYC
IYRGIVDSEMQMITIPAKRNQSEVGRSLSRDCSSEIDLNTSQHSDIENYSNKSMLDGSLTYDTE
MSCEEGGDVGTRYGSEPTSVCEDCSTSWSNQCENTRALLRIRSHMNSEGNKRKRWCGRTAEMDC
LPRISFANSESGTNPIEDKYEIALALKELVSRGMAAEAFSEISTMDPDFFTQNPGLLFHLKQVE
FLKLVSAGDHNGALKVACFHLGPLAANDQSLLKTLKETLLVLLQPDGTAPGKDLPLNDLANTLQ
VSVGNRLGIEEPKLMKIIKATLHTHTEWFKLQMCKDRFNNLLKIDSLKEVNTDLIGAIKSKSKK
DSNTNLSSQVTTTSSSTMTSEDGGSSSLMMMTQTLPREALWEESAILKVMEAYEEFKHVLLALI
YDKDDQTSPVANEWAEKRRYEMAGLMSSVLRASLQAYDPVFSMTLRYLISIHKGFCFHQGISSA
VSDLTHRLLLEERDAPATPIESMYEVPPFDEVDIQALAHAVELTRQGAVDSMKFAKGDLFQAFQ
NELCRMRLDVSVLDELVKEYCIYRGIVDSEMQMITIPAKRNQSEVGRSLSRDCSSEIDLNTSQH
SDIENYSNKSMLDGSLTYDTEMSCEEGGDVGTRYGSEPTSVCEDCSTSWSNQCENTRALLRIRS
HMNSEGNKRKRWCGRTAEMDCLPRISFANSESGTNPIEDKYEIALALKELVSRGMAAEAFSEIS
TMDPDFFTQNPGLLFHLKQVEFLKLVSAGDHNGALKVACFHLGPLAANDQSLLKTLKETLLVLL
QPDGTAPGKDLPLNDLANTLQVSVGNRLGIEEPKLMKIIKATLHTHTEWFKLQMCKDRFNNLLK
IDSLKEVNTDLIGAIKSKSKKDSNTNLSSQVTTTSSSTMTSEDGGSSSLMMMTQTLPREALWEE
SAILKVMEAYEEFKHVLLALIYDKDDQTSPVANEWAEKRRYEMAGLMSSVLRASLQAYDPVFSM
TLRYLISIHKGFCFHQGISSAVSDLTHRLLLEERDAPATPIESMYEVPPFDEVDIQALAHAVEL
TRQGAVDSMKFAKGDLFQAFQNELCRMRLDVSVLDELVKEYCIYRGIVDSEMQMITIPAKRNQS
EVGRSLSRDCSSEIDLNTSQHSDIENYSNKSMLDGSLTYDTEMSCEEGGDVGTRYGSEPTSVCE
DCSTSWSNQCENTRALLRIRSHMNSEGNKRKRWCGRTAEMDCLPRISFANSESGTNPIEDKYEI
ALALKELVSRGMAAEAFSEISTMDPDFFTQNPGLLFHLKQVEFLKLVSAGDHNGALKVACFHLG
PLAANDQSLLKTLKETLLVLLQPDGTAPGKDLPLNDLANTLQVSVGNRLGIEEPKLMKIIKATL
HTHTEWFKLQMCKDRFNNLLKIDSLKEVNTDLIGAIKSKSKKDSNTNLSSQVTTTSSSTMTSED
GGSSSLMMMTQTLPREALWEESAILKVMEAYEEFKHVLLALIYDKDDQTSPVANEWAEKRRYEM
AGLMSSVLRASLQAYDPVFSMTLRYLISIHKGFCFHQGISSAVSDLTHRLLLEERDAPATPIES
MYEVPPFDEVDIQALAHAVELTRQGAVDSMKFAKGDLFQAFQNELCRMRLDVSVLDELVKEYCI
YRGIVDSEMQMITIPAKRNQSEVGRSLSRDCSSEIDLNTSQHSDIENYSNKSMLDGSLTYDTEM
SCEEGGDVGTRYGSEPTSVCEDCSTSWSNQCENTRALLRIRSHMNSEGNKRKRWCGRTAEMDCL
PRISFANSESGTNPIEDKYEIALALKELVSRGMAAEAFSEISTMDPDFFTQNPGLLFHLKQVEF
LKLVSAGDHNGALKVACFHLGPLAANDQSLLKTLKETLLVLLQPDGTAPGKDLPLNDLANTLQV
SVGNRLGIEEPKLMKIIKATLHTHTEWFKLQMCKDRFNNLLKIDSLKEVNTDLIGAIKSKSKKD
SNTNLSSQVTTTSSSTMTSEDGGSSSLMMMTQTLPREALWEESAILKVM(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Pan et al., 2017