Detail information of AT5G26742_circ_g.25


General Information
CircRNA Name AT5G26742_circ_g.25
ID in PlantcircBase ath_circ_040597
Alias NA
Organism Arabidpsis thaliana
Position chr5: 9286098-9288214  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRCexplorer, KNIFE, PcircRNA_finder
Parent gene AT5G26742
Parent gene annotation RH3
Parent gene strand -
Alternative splicing AT5G26742_circ_g.4 AT5G26742_circ_g.5 AT5G26742_circ_g.6 AT5G26742_circ_g.7 AT5G26742_circ_g.8 AT5G26742_circ_g.9 AT5G26742_circ_g.10 AT5G26742_circ_g.11 AT5G26742_circ_g.12 AT5G26742_circ_g.13 AT5G26742_circ_g.14 AT5G26742_circ_g.15 AT5G26742_circ_g.16 AT5G26742_circ_g.17 AT5G26742_circ_g.18 AT5G26742_circ_g.19 AT5G26742_circ_g.20 AT5G26742_circ_g.21 AT5G26742_circ_g.22 AT5G26742_circ_g.23 AT5G26742_circ_g.24 AT5G26742_circ_g.26 AT5G26742_circ_g.27 AT5G26742_circ_g.28 AT5G26742_circ_g.29 AT5G26742_circ_g.30 AT5G26742_circ_g.31 AT5G26742_circ_g.32
Support reads 36
Tissues whole_plant
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT5G26742.2:7
AT5G26742.3:7
AT5G26742.1:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTTTAATGATAGGAATACCAAAAGCCAAAGTCTTTCCAGTTCCTGTCTTTGCACGAGCTATAAT
ATCTCTTCCTTGCAGTGCAGGTACCAACACAGCTCTctttgttatcatggataaactgttgcct
tcggggacatctttctctaggagctctttcgcgatctcctctggtagatcaaatacagctcctt
ggatctga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTTGTTATCATGGATAAACTGTTGCCTTCGGGGACATCTTTCTCTAGGAGCTCTTTCGCGATC
TCCTCTGGTAGATCAAATACAGCTCCTTGGATCTGAGATAACAGAATCATAAATTTCCAAAGAA
GATAGTTTTGACGCTACTGCAAAAGTAACAACCATTTCAAAGATATTTACCCTGTCATCGGCGA
TCAAGAAGATTTTTCCAACTTCATCTGCAGCTGTACGGTAAAGATCGGAAAGAAAACCAGTAAC
AGACCTCGCAGACAGAAAGCCTCTAGCGTTCGTTGGATCTCGGATCAATTGCAAAGTCACCCAT
CCCTGCAGTCCAAAAATTTAACTTCAGCTCATGAATAACACATTTCTATGAAAAAAAAGATTTG
CTATATAGATTATGTTGCAGTTTGTAAGAGTATCAAGAAGCATTCTAGAAAGTTCAATGATCTC
GTATTTGTTTTTTTGAATTTTTAAAGCATGGTTGAGAATTATACCTTCTCATGGCTGAGGAGAG
ATCTTGATGAAGGCGGCTGAGAGAAACCACTCAGGTGAGCTAGAGCTGCAGCTAAAGCATCTGT
TCCTTTCTCCTCATATAGTTTTTGAGCAGTTGCTGAGAAAAACTTTATGGAGTCAGGGTGAACA
CCATTTAGAGTGGCCACCACTTGGTCTGCTGACGATTCCAACAAGTCTCCAACAGTTGGTGGGC
TAATGAATTCAAAATGGCAGCCTACGTCACGCTCCAGAGACCTCACTGTTCTCTTTTGGCTGCT
GGTGTGCATGAGAATGGCAGAGCCTTCTTTCCCTGCACGCCCAGTACGACCAGAACGGTGCACA
AAAGTTTCTGGGTCATTAGGAAGTTCATAGTGGATAACCTGTAGAAGAAAATGTCAGAACAAAC
AGACAAACATGCCATAAGAGATGATAAACTATGTACCGAAACTTTGAGAACTTACTAGATCTAC
GTTCGGGATGTCAAGTCCACGAGATGCAACATCAGTGGCAACTAATACGGTGAATTTCCCTTGA
CGGAAAGCATTGAGTGTTCTCTCTCTTTGATGCTGAGATATATCTCCATGAAGTGCTTCGGTAG
CTATACTGTTTGACAATGCAAGAGAAACTTCGTCTGCATCTCTTTTAGTTTGGGTAAAAACAAT
GGTCTTGCCACCCTTCGCATACACCTTCAAATTAAGAAAATAAAAATAATCAACTGAGAGCCAA
AGCACCAATCAATCATCAATCATGTTAAGAAAACAGCAAATTATCAGCTCAGACATACTGTAAT
AAGGTCGCTTAGAATAGTGCGTTTTGATGTCGATGTGGTTGCGATTGCATAAAGTTTGATACCC
TCTGCGAGCTTCTCATCTTGGTCTCCAACCTGCCAATCAAATAAAACAAACGAGAAGATAGCAT
TAAGCATCTGAGTCAAGCTGAAAATTGATAAGGAACAAAGGCAAGCATAGGAAAGCGTTTACCA
GATCAATATTCAAGGGATTGTCAAGGTACTTCCTCGCCAACTTCTTAACCCAAGTAGGCATAGT
TGCTGAGAAAAGCATACTTTGTCGCTTAGTTGGAAGATTCTCAAGAATCGATTCCACGGCCTCC
TCAAACCCAACAGCAAGCATCTGATCAGCTTCATCAAGTACCAAATACTCAACTTCTCCCAATT
TAAGACTCCTTCCTTCAATCAAATCAATGATTCTTCCAGGAGTTCCAACAACAACATCAACACC
ACGAGTTAAAGCACTCTGCTGAATGGTATAAGAAACTCCCCCATACACACAAACAGTGCTCAAA
TAAGGTGCAGACTCCTTAATCTCCTTCTCCACTTGCTTAGCCAGCTCTCGGGTCGGCGCAAGGA
CAAGGAACTTAGGAAGACGACCAGACCTCCTGCTCACAACAAAAGACTAAACCTTTAGCAAAAT
CCAATGGAAAAAAGGTCACATCTAAACAAATGGTATACCAAAGTAAAAATAAACAAAGACCTGA
AAGCAGTGTAGTCTCCAGCTTCTTCAGTGAGACGTTTAATGATAGGAATACCAAAAGCCAAAGT
CTTTCCAGTTCCTGTCTTTGCACGAGCTATAATATCTCTTCCTTGCAGTGCAGGTACCAACACA
GCTCT
Conservation Information
Conserved circRNAs NA
PMCS 0.239903752
Functional Information
Coding potential Y
Potential coding position 9287718-9286100(-)
Potential amino acid sequence MLAVGFEEAVESILENLPTKRQSMLFSATMPTWVKKLARKYLDNPLNIDLVGDQDEKLAEGIKL
YAIATTSTSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALSNSIATEALHGDISQHQRER
TLNAFRQGKFTVLVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGSAILMHT
SSQKRTVRSLERDVGCHFEFISPPTVGDLLESSADQVVATLNGVHPDSIKFFSATAQKLYEEKG
TDALAAALAHLSGFSQPPSSRSLLSHEKGWVTLQLIRDPTNARGFLSARSVTGFLSDLYRTAAD
EVGKIFLIADDRIQGAVFDLPEEIAKELLEKDVPEGNSLSMITKRAVLVPALQGRDIIARAKTG
TGKTLAFGIPIIKRLTEEAGDYTAFRRSGRLPKFLVLAPTRELAKQVEKEIKESAPYLSTVCVY
GGVSYTIQQSALTRGVDVVVGTPGRIIDLIEGRSLKLGEVEYLVLDEADQMLAVGFEEAVESIL
ENLPTKRQSMLFSATMPTWVKKLARKYLDNPLNIDLVGDQDEKLAEGIKLYAIATTSTSKRTIL
SDLITVYAKGGKTIVFTQTKRDADEVSLALSNSIATEALHGDISQHQRERTLNAFRQGKFTVLV
ATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGSAILMHTSSQKRTVRSLERDV
GCHFEFISPPTVGDLLESSADQVVATLNGVHPDSIKFFSATAQKLYEEKGTDALAAALAHLSGF
SQPPSSRSLLSHEKGWVTLQLIRDPTNARGFLSARSVTGFLSDLYRTAADEVGKIFLIADDRIQ
GAVFDLPEEIAKELLEKDVPEGNSLSMITKRAVLVPALQGRDIIARAKTGTGKTLAFGIPIIKR
LTEEAGDYTAFRRSGRLPKFLVLAPTRELAKQVEKEIKESAPYLSTVCVYGGVSYTIQQSALTR
GVDVVVGTPGRIIDLIEGRSLKLGEVEYLVLDEADQMLAVGFEEAVESILENLPTKRQSMLFSA
TMPTWVKKLARKYLDNPLNIDLVGDQDEKLAEGIKLYAIATTSTSKRTILSDLITVYAKGGKTI
VFTQTKRDADEVSLALSNSIATEALHGDISQHQRERTLNAFRQGKFTVLVATDVASRGLDIPNV
DLVIHYELPNDPETFVHRSGRTGRAGKEGSAILMHTSSQKRTVRSLERDVGCHFEFISPPTVGD
LLESSADQVVATLNGVHPDSIKFFSATAQKLYEEKGTDALAAALAHLSGFSQPPSSRSLLSHEK
GWVTLQLIRDPTNARGFLSARSVTGFLSDLYRTAADEVGKIFLIADDRIQGAVFDLPEEIAKEL
LEKDVPEGNSLSMITKRAVLVPALQGRDIIARAKTGTGKTLAFGIPIIKRLTEEAGDYTAFRRS
GRLPKFLVLAPTRELAKQVEKEIKESAPYLSTVCVYGGVSYTIQQSALTRGVDVVVGTPGRIID
LIEGRSLKLGEVEYLVLDEADQMLAVGFEEAVESILENLPTKRQSMLFSATMPTWVKKLARKYL
DNPLNIDLVGDQDEKLAEGIKLYAIATTSTSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSL
ALSNSIATEALHGDISQHQRERTLNAFRQGKFTVLVATDVASRGLDIPNVDLVIHYELPNDPET
FVHRSGRTGRAGKEGSAILMHTSSQKRTVRSLERDVGCHFEFISPPTVGDLLESSADQVVATLN
GVHPDSIKFFSATAQKLYEEKGTDALAAALAHLSGFSQPPSSRSLLSHEKGWVTLQLIRDPTNA
RGFLSARSVTGFLSDLYRTAADEVGKIFLIADDRIQGAVFDLPEEIAKELLEKDVPEGNSLSMI
TK(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017