Detail information of BGIOSGA027623_circ_g.3


General Information
CircRNA Name BGIOSGA027623_circ_g.3
ID in PlantcircBase osi_circ_018220
Alias Chr08:3563866_3564330(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr8: 3670460-3670924  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA027623
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA027623_circ_g.2 BGIOSGA027623_circ_g.4 BGIOSGA027623_circ_g.5 BGIOSGA027623_circ_g.6
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-No
Splicing signals   CT-GG
Number of exons covered BGIOSGA027623-TA:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GATCCACCCAGTCCGCTCACCCTTCGGCGCACGCCCCCGGTGGAACACGAGCGTCTTCTTCATG
CCAATTACTTGCTGCTTCTTCTTGTCACCCTTGGACctgggtcgctcaattttctcctcttgct
ttcggaacagccggtagagaacgtaacctccctgaaaatacaaatacgaatactaagataccag
aacagaaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGGGTCGCTCAATTTTCTCCTCTTGCTTTCGGAACAGCCGGTAGAGAACGTAACCTCCCTGAA
AATACAAATACGAATACTAAGATACCAGAACAGAAACATCAGATGATTATGTCTCTTTTTTTCC
CAAAAGATATTTGCAGTGTTCATTTGACATTCTCATTTGCTGTAAACTCACAACCGAGCTGTGA
ACTGTGAGCATACCTATATATAACAACATCGTCGCTAAAAATCTTGACATACTGATCATGAACT
TGCTGAGAAAATAAACCTACAAAGGAAAGCTACAAAACAAGGTACTAGCACTATCGCATACCTG
CTCACCGGACTCAAACTCCGGCTCGGTGGTGCGGTACTCATGCATGATCCACCCAGTCCGCTCA
CCCTTCGGCGCACGCCCCCGGTGGAACACGAGCGTCTTCTTCATGCCAATTACTTGCTGCTTCT
TCTTGTCACCCTTGGAC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021