Detail information of BGIOSGA012294_circ_g.2


General Information
CircRNA Name BGIOSGA012294_circ_g.2
ID in PlantcircBase osi_circ_014177
Alias Chr03:8969492_8969913(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr3: 9371574-9371995  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRCexplorer2
Parent gene BGIOSGA012294
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA011047_circ_igg.1 BGIOSGA012294_circ_g.1 BGIOSGA012295_circ_igg.1
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered BGIOSGA012294-TA:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TAATACTAGTGAACCTACAAGGACTGAAACCAGTGAACCTACAAGGACTGAAACTAGTGAACCT
ACAAGGAATGGTCAGGAAGTGCATTATGTTGGAGAGggttgatgctgagagagcttatcatcag
aatgctgctgatattctgaacaaacttcacgacgaggtacataactgttgcaaaagaaagaaat
ggagattc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTTGATGCTGAGAGAGCTTATCATCAGAATGCTGCTGATATTCTGAACAAACTTCACGACGAG
GTACATAACTGTTGCAAAAGAAAGAAATGGAGATTCTTACACCTGTTGGCTTAGAGGAAATTCG
AATGCCATAAACCTGGAAAAAGTGTGTATGTTTATGCTGAATATCGCGCTGTTTTTGTTCTGCT
AATTTGCACAGATGGTCCAAGCAAAACACCATGATGAGCCGGAAAACCATTATGATGAGACATC
ATCAGATCCTAAAACAGCTGCAACACATGAGCATTCACGTAGCACATCCGAAGATCACATATTT
ACTAATACTAGTGAACCTACAAGGACTGAAACCAGTGAACCTACAAGGACTGAAACTAGTGAAC
CTACAAGGAATGGTCAGGAAGTGCATTATGTTGGAGAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021