Detail information of BGIOSGA033987_circ_g.1


General Information
CircRNA Name BGIOSGA033987_circ_g.1
ID in PlantcircBase osi_circ_009021
Alias Chr11:18913137_18913639(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr11: 13588166-13588668  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   i-circRNA
Identification method CIRCexplorer2
Parent gene BGIOSGA033987
Parent gene annotation NA
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   CG-TA
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCCACACGAAGTTATGAGAACAACAGACTACAAATATAATATTTGTTTTTTTGCGAAGATTGAG
AAACTGAAACTCCAAAGAAGGACAATAGTAACATACttttcacatcagttctctagatccatcc
aaaatattctatttgttctttgttatttgttgttttggtcattaacatagtctccaatacacag
ttttgatc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TTTTCACATCAGTTCTCTAGATCCATCCAAAATATTCTATTTGTTCTTTGTTATTTGTTGTTTT
GGTCATTAACATAGTCTCCAATACACAGTTTTGATCACTACTTTTCAATTGTATATAAAAATTA
TATATCTGTTAATATCATTTCTATGAGTGACGAGCTTACATTGTTTTGCGCATTGTAGTAAGCT
TAAGTTTAAAGGTTTGACTGCAGTAATGTACATAATCCAAAATGACATATTGAGAATGGAGGTA
ATATTGAGAATAACCTCCTCATAATCAACATCAATTTAATAAGTTTTGTAAGTTAAATCCTAAA
TGACAGATGAACGAGATGGTTGTAACGATTGCTTCATTGCCTACAGGTTGGCCAATCCCGTTGT
TAGAACAATATCTATTTTATCCACACGAAGTTATGAGAACAACAGACTACAAATATAATATTTG
TTTTTTTGCGAAGATTGAGAAACTGAAACTCCAAAGAAGGACAATAGTAACATAC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021