Detail information of Zm00001d047788_circ_g.1


General Information
CircRNA Name Zm00001d047788_circ_g.1
ID in PlantcircBase zma_circ_005961
Alias ear_test_circ_002255
Organism Zea mays
Position chr9: 141790265-141790421  JBrowse»
Reference genome AGPv4.38
Type   ue-circRNA
Identification method find_circ
Parent gene Zm00001d047788
Parent gene annotation Histone H2B
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues ear
Exon boundary   No-No
Splicing signals   CT-GA
Number of exons covered Zm00001d047788_T002:1
Zm00001d047788_T005:1
Zm00001d047788_T004:1
Zm00001d047788_T006:1
Zm00001d047788_T007:1
Zm00001d047788_T003:1
Zm00001d047788_T001:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGTGACGGCCTTGGTTCCCTCGGAGACGGCATGTTTGGCGAGCTCTCCTGGGAGGACGAGGCGC
ACGGAGGTCTGGATcacgacgaagaacccttgtaagaaggggagacctaacaaatccgtggacg
ctgcaggctgctcaattgctggtgaactt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CACGACGAAGAACCCTTGTAAGAAGGGGAGACCTAACAAATCCGTGGACGCTGCAGGCTGCTCA
ATTGCTGGTGAACTTGGTGACGGCCTTGGTTCCCTCGGAGACGGCATGTTTGGCGAGCTCTCCT
GGGAGGACGAGGCGCACGGAGGTCTGGAT
Conservation Information
Conserved circRNAs NA
PMCS 0.437931157
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Tang et al., 2018