Detail information of BGIOSGA034617_circ_g.1


General Information
CircRNA Name BGIOSGA034617_circ_g.1
ID in PlantcircBase osi_circ_009340
Alias Chr11:892177_892671(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr11: 437672-438166  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2
Parent gene BGIOSGA034617
Parent gene annotation NA
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered BGIOSGA034617-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCCAACTGATGGCTTACCGTGCAGGCAGAATATGTCCGGCCATGCCTGGAATCCTTCCAGCACC
CTCCATTGTTAATTTCACAACGGCCAGATCCCGAAGcttatgcatgtatcatgctccttcatat
aaagcaagccgccactgcaaccgcattcatagcttccccatgtgttcttgcatttgcattcctt
gcactggc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTATGCATGTATCATGCTCCTTCATATAAAGCAAGCCGCCACTGCAACCGCATTCATAGCTTC
CCCATGTGTTCTTGCATTTGCATTCCTTGCACTGGCATGCAGTCCTTTCCTTGCATTCATCAAT
ATCTTTCACAAAATATTTCACATCAGTACAAGGGGTCAAGTGCACAACAAGGGTGTATTGCAAG
TGATATTTCACTAAAACTACAAGCTTTGCAGGATGGCAAGCACATCCAACAGCTGAACAGGGTT
CACAAATCGATTCTTACCTTCGCATTTGTGGACTCCATCACCTTTGAACCCATCCGGACATTTA
CAACCATCATTCTGTACATTAAAAACAGCATAAATATGTTTTTAAATTATAACTACACATGCAG
ACAACAAATACCCCAACTGATGGCTTACCGTGCAGGCAGAATATGTCCGGCCATGCCTGGAATC
CTTCCAGCACCCTCCATTGTTAATTTCACAACGGCCAGATCCCGAAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021