Detailed infomation of each circRNA
General Information | |
---|---|
CircRNA Name | Os12g0114100_circ_g.2 |
ID in PlantcircBase | osa_circ_010357 |
Alias | NA |
Organism | Oryza sativa |
Position | chr12: 700514-701819 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer |
Parent gene | Os12g0114100 |
Parent gene annotation |
Similar to MAP kinase-like protein. (Os12t0114100-01);Similar to MAP kinase-like protein. (Os12t0114100-02) |
Parent gene strand | - |
Alternative splicing | Os12g0114100_circ_g.3 |
Support reads | 2 |
Tissues | root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Os12t0114100-01:1 Os12t0114100-02:1 |
Conservation Information | |
---|---|
Conserved circRNAs | NA |
PMCS | 0.329542566 |
Functional Information | |
---|---|
Coding potential | Y |
Potential coding position |
701014-700630(+) 701588-700517(+) 701794-700974(-) 700668-700974(-) |
Potential amino acid sequence |
MSNGIVIVVVLRRGEEGVEQELLGRGAVGGVDKAPADEAAGVGVGEEVEGVGELAGGDLLVDLR WVVALAVGVLVGEHLEHAHAEGVDVDADAVALVVHLGGHELRRADDAAGGGAAAEDGGEAEVAD LDLAEVAVDEDVVALEVAVDDAAGVEVGEAAEDGARPGGDGAAADARVAEAVGAEGAGGEELGD EVEGAAGGVDPGGVEGDDGVVAEVGEEAHLRVHAVEGVRGAEDVGDGGLVPRHLHPPQLVEPSV HRLHRTLPQHLRQLLTSQLFHVGQETPLTMWAPLRREIPERRSAKRRGSRRD*(+) MKLKVRREGWTQEAWKAMMASWRRSARRLTSAYMRWRASGVRRTSEMVAWFHATSTPRSSSNPR YTVFIAPFPSTSDNS*(+) MKTVYRGFDELRGVEVAWNQATISDVLRTPDALHRMYAEVSLLADLRHDAIIAFHASWVHPSRR TFNFITELFSSGTLRSYRLRYPRVSRRAVAAWARAILRGLAYLHSRGVIHRDLKCDNIFVNGHL GQVKIGDLGLAAVLRGCTSARSVIGTPEFMAPEMYDECYGVGVDVYSFGMCMLEMLTNEYPYSE CDNPAQIYKKVTAGKLPDAFYLLTDADARRFIGRCLVDAAHRPSAEELLLDPFLSPPQNHDDHN TIAHATAPPPPLPLACSNSSEEQEEEEAPAAKTTGMAITGKLNKEHDTIFLKVQIGGGGNVRNI YFPFDVANDTAMEVATEMVKELDIADREPTEIAAMIEQEIVRLVPGYKQHEYSYADDDDDDDVN GQPNPFYYLSSSPTSSQGSLCGVGPTSSEGFPGPHGKVDWSRVVGGAGEGCDEDGVPRVRRAAG GGGGVEPGHHLRRPPHPGRPPPHVRGGEPPRRPPPRRHHRLPRLLGPPLPPHLQLHHRALLLRH PPLLPPPLPARQPPRRRRLGARHPPRPRLPPLPRRHPPRPQVRQHLRQRPPRPGQDRRPRPRRR PPRLHLRPQRHRHAGVHGPRDVRRVLRRRRRRLLLRHVHARDAHQRVPLQRVRQPSADLQEGHR RQAPRRLLPPHRRRRPPLHRPVPCRRRPPPLCRGAPARPLPLPASEPRRSQYHCSCHCAATAIA IGVQ*(-) MTTTMMTSTDNLIPSTTSPLRRPPLRDLSAEWGPHRQRGFLAHMEKLTGQELSEVLGKGAMKTV YRGFDELRGVEVAWNQATISDVLRTPDALHRMYAEVSLLADLRHDAIIAFHASWVHPSRRTFNF ITELFSSGTLRSYRLRYPRVSRRAVAAWARAILRGLAYLHSRGVIHRDLKCDNIFVNGHLGQVK IGDLGLAAVLRGCTSARSVIGTPEFMAPEMYDECYGVGVDVYSFGMCMLEMLTNEYPYSECDNP AQIYKKVTAGKLPDAFYLLTDADARRFIGRCLVDAAHRPSAEELLLDPFLSPPQNHDDHNTIAH ATAPPPPLPLACSNSSEEQEEEEAPAAKTTGMAITGKLNKEHDTIFLKVQIGGGGNVRNIYFPF DVANDTAMEVATEMVKELDIADREPTEIAAMIEQEIVRLVPGYKQHEYSYADDDDDDDVNGQPN PFYYLSSSPTSSQGSLCGVGPTSSEGFPGPHGKVDWSRVVGGAGEGCDEDGVPRVRRAAGGGGG VEPGHHLRRPPHPGRPPPHVRGGEPPRRPPPRRHHRLPRLLGPPLPPHLQLHHRALLLRHPPLL PPPLPARQPPRRRRLGARHPPRPRLPPLPRRHPPRPQVRQHLRQRPPRPGQDRRPRPRRRPPRL HLRPQRHRHAGVHGPRDVRRVLRRRRRRLLLRHVHARDAHQRVPLQRVRQPSADLQEGHRRQAP RRLLPPHRRRRPPLHRPVPCRRRPPPLCRGAPARPLPLPASEPRRSQYHCSCHCAATAIAIGVQ *(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
---|---|
References | Chu et al., 2017 |