Detail information of Os12g0114100_circ_g.2


General Information
CircRNA Name Os12g0114100_circ_g.2
ID in PlantcircBase osa_circ_010357
Alias NA
Organism Oryza sativa
Position chr12: 700514-701819  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os12g0114100
Parent gene annotation Similar to MAP kinase-like protein. (Os12t0114100-01);Similar to
MAP kinase-like protein. (Os12t0114100-02)
Parent gene strand -
Alternative splicing Os12g0114100_circ_g.3
Support reads 2
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os12t0114100-01:1
Os12t0114100-02:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CGGAGATGGTGGCCTGGTTCCACGCCACCTCCACCCCCCGCAGCTCGTCGAACCCTCGGTACAC
CGTCTTCATCGCACCCTTCCCCAGCACCTCCGACAActcttgaccagtcaacttttccatgtgg
gccaggaaacccctctgacgatgtgggccccactccgcagagagatccctgagaggaggtcggc
gaagagga
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 1306
Transcript exons: 700514-701819
CTCTTGACCAGTCAACTTTTCCATGTGGGCCAGGAAACCCCTCTGACGATGTGGGCCCCACTCC
GCAGAGAGATCCCTGAGAGGAGGTCGGCGAAGAGGAGAGGTAGTAGAAGGGATTAGGTTGTCCG
TTGACGTCATCATCGTCGTCGTCATCCGCGTACGAATACTCGTGCTGCTTGTACCCTGGTACCA
ACCTCACGATCTCCTGCTCGATCATGGCGGCGATCTCCGTGGGCTCCCGGTCGGCGATGTCCAG
CTCCTTCACCATCTCCGTCGCCACCTCCATCGCCGTGTCGTTCGCCACGTCGAACGGGAAGTAG
ATGTTCCGCACGTTGCCGCCGCCGCCGATCTGCACCTTGAGGAAGATGGTGTCGTGCTCCTTGT
TCAGCTTCCCGGTGATCGCCATGCCCGTCGTCTTTGCTGCCGGCGCCTCCTCCTCCTCTTGCTC
CTCACTGGAATTACTGCACGCCAATGGCAATGGCGGTGGCGGCGCAGTGGCATGAGCAATGGTA
TTGTGATCGTCGTGGTTCTGAGGCGGGGAGAGGAAGGGGTCGAGCAGGAGCTCCTCGGCAGAGG
GGCGGTGGGCGGCGTCGACAAGGCACCGGCCGATGAAGCGGCGGGCGTCGGCGTCGGTGAGGAG
GTAGAAGGCGTCGGGGAGCTTGCCGGCGGTGACCTTCTTGTAGATCTGCGCTGGGTTGTCGCAC
TCGCTGTAGGGGTACTCGTTGGTGAGCATCTCGAGCATGCACATGCCGAAGGAGTAGACGTCGA
CGCCGACGCCGTAGCACTCGTCGTACATCTCGGGGGCCATGAACTCCGGCGTGCCGATGACGCT
GCGGGCGGAGGTGCAGCCGCGGAGGACGGCGGCGAGGCCGAGGTCGCCGATCTTGACCTGGCCG
AGGTGGCCGTTGACGAAGATGTTGTCGCACTTGAGGTCGCGGTGGATGACGCCGCGGGAGTGGA
GGTAGGCGAGGCCGCGGAGGATGGCGCGCGCCCAGGCGGCGACGGCGCGGCGGCTGACGCGCGG
GTAGCGGAGGCGGTAGGAGCGGAGGGTGCCGGAGGAGAAGAGCTCGGTGATGAAGTTGAAGGTG
CGGCGGGAGGGGTGGACCCAGGAGGCGTGGAAGGCGATGATGGCGTCGTGGCGGAGGTCGGCGA
GGAGGCTCACCTCCGCGTACATGCGGTGGAGGGCGTCCGGGGTGCGGAGGACGTCGGAGATGGT
GGCCTGGTTCCACGCCACCTCCACCCCCCGCAGCTCGTCGAACCCTCGGTACACCGTCTTCATC
GCACCCTTCCCCAGCACCTCCGACAA

Genomic sequence CTCTTGACCAGTCAACTTTTCCATGTGGGCCAGGAAACCCCTCTGACGATGTGGGCCCCACTCC
GCAGAGAGATCCCTGAGAGGAGGTCGGCGAAGAGGAGAGGTAGTAGAAGGGATTAGGTTGTCCG
TTGACGTCATCATCGTCGTCGTCATCCGCGTACGAATACTCGTGCTGCTTGTACCCTGGTACCA
ACCTCACGATCTCCTGCTCGATCATGGCGGCGATCTCCGTGGGCTCCCGGTCGGCGATGTCCAG
CTCCTTCACCATCTCCGTCGCCACCTCCATCGCCGTGTCGTTCGCCACGTCGAACGGGAAGTAG
ATGTTCCGCACGTTGCCGCCGCCGCCGATCTGCACCTTGAGGAAGATGGTGTCGTGCTCCTTGT
TCAGCTTCCCGGTGATCGCCATGCCCGTCGTCTTTGCTGCCGGCGCCTCCTCCTCCTCTTGCTC
CTCACTGGAATTACTGCACGCCAATGGCAATGGCGGTGGCGGCGCAGTGGCATGAGCAATGGTA
TTGTGATCGTCGTGGTTCTGAGGCGGGGAGAGGAAGGGGTCGAGCAGGAGCTCCTCGGCAGAGG
GGCGGTGGGCGGCGTCGACAAGGCACCGGCCGATGAAGCGGCGGGCGTCGGCGTCGGTGAGGAG
GTAGAAGGCGTCGGGGAGCTTGCCGGCGGTGACCTTCTTGTAGATCTGCGCTGGGTTGTCGCAC
TCGCTGTAGGGGTACTCGTTGGTGAGCATCTCGAGCATGCACATGCCGAAGGAGTAGACGTCGA
CGCCGACGCCGTAGCACTCGTCGTACATCTCGGGGGCCATGAACTCCGGCGTGCCGATGACGCT
GCGGGCGGAGGTGCAGCCGCGGAGGACGGCGGCGAGGCCGAGGTCGCCGATCTTGACCTGGCCG
AGGTGGCCGTTGACGAAGATGTTGTCGCACTTGAGGTCGCGGTGGATGACGCCGCGGGAGTGGA
GGTAGGCGAGGCCGCGGAGGATGGCGCGCGCCCAGGCGGCGACGGCGCGGCGGCTGACGCGCGG
GTAGCGGAGGCGGTAGGAGCGGAGGGTGCCGGAGGAGAAGAGCTCGGTGATGAAGTTGAAGGTG
CGGCGGGAGGGGTGGACCCAGGAGGCGTGGAAGGCGATGATGGCGTCGTGGCGGAGGTCGGCGA
GGAGGCTCACCTCCGCGTACATGCGGTGGAGGGCGTCCGGGGTGCGGAGGACGTCGGAGATGGT
GGCCTGGTTCCACGCCACCTCCACCCCCCGCAGCTCGTCGAACCCTCGGTACACCGTCTTCATC
GCACCCTTCCCCAGCACCTCCGACAA
Conservation Information
Conserved circRNAs NA
PMCS 0.329542566
Functional Information
Coding potential Y
Potential coding position 701014-700630(+)
701588-700517(+)
701794-700974(-)
700668-700974(-)
Potential amino acid sequence MSNGIVIVVVLRRGEEGVEQELLGRGAVGGVDKAPADEAAGVGVGEEVEGVGELAGGDLLVDLR
WVVALAVGVLVGEHLEHAHAEGVDVDADAVALVVHLGGHELRRADDAAGGGAAAEDGGEAEVAD
LDLAEVAVDEDVVALEVAVDDAAGVEVGEAAEDGARPGGDGAAADARVAEAVGAEGAGGEELGD
EVEGAAGGVDPGGVEGDDGVVAEVGEEAHLRVHAVEGVRGAEDVGDGGLVPRHLHPPQLVEPSV
HRLHRTLPQHLRQLLTSQLFHVGQETPLTMWAPLRREIPERRSAKRRGSRRD*(+)
MKLKVRREGWTQEAWKAMMASWRRSARRLTSAYMRWRASGVRRTSEMVAWFHATSTPRSSSNPR
YTVFIAPFPSTSDNS*(+)
MKTVYRGFDELRGVEVAWNQATISDVLRTPDALHRMYAEVSLLADLRHDAIIAFHASWVHPSRR
TFNFITELFSSGTLRSYRLRYPRVSRRAVAAWARAILRGLAYLHSRGVIHRDLKCDNIFVNGHL
GQVKIGDLGLAAVLRGCTSARSVIGTPEFMAPEMYDECYGVGVDVYSFGMCMLEMLTNEYPYSE
CDNPAQIYKKVTAGKLPDAFYLLTDADARRFIGRCLVDAAHRPSAEELLLDPFLSPPQNHDDHN
TIAHATAPPPPLPLACSNSSEEQEEEEAPAAKTTGMAITGKLNKEHDTIFLKVQIGGGGNVRNI
YFPFDVANDTAMEVATEMVKELDIADREPTEIAAMIEQEIVRLVPGYKQHEYSYADDDDDDDVN
GQPNPFYYLSSSPTSSQGSLCGVGPTSSEGFPGPHGKVDWSRVVGGAGEGCDEDGVPRVRRAAG
GGGGVEPGHHLRRPPHPGRPPPHVRGGEPPRRPPPRRHHRLPRLLGPPLPPHLQLHHRALLLRH
PPLLPPPLPARQPPRRRRLGARHPPRPRLPPLPRRHPPRPQVRQHLRQRPPRPGQDRRPRPRRR
PPRLHLRPQRHRHAGVHGPRDVRRVLRRRRRRLLLRHVHARDAHQRVPLQRVRQPSADLQEGHR
RQAPRRLLPPHRRRRPPLHRPVPCRRRPPPLCRGAPARPLPLPASEPRRSQYHCSCHCAATAIA
IGVQ*(-)
MTTTMMTSTDNLIPSTTSPLRRPPLRDLSAEWGPHRQRGFLAHMEKLTGQELSEVLGKGAMKTV
YRGFDELRGVEVAWNQATISDVLRTPDALHRMYAEVSLLADLRHDAIIAFHASWVHPSRRTFNF
ITELFSSGTLRSYRLRYPRVSRRAVAAWARAILRGLAYLHSRGVIHRDLKCDNIFVNGHLGQVK
IGDLGLAAVLRGCTSARSVIGTPEFMAPEMYDECYGVGVDVYSFGMCMLEMLTNEYPYSECDNP
AQIYKKVTAGKLPDAFYLLTDADARRFIGRCLVDAAHRPSAEELLLDPFLSPPQNHDDHNTIAH
ATAPPPPLPLACSNSSEEQEEEEAPAAKTTGMAITGKLNKEHDTIFLKVQIGGGGNVRNIYFPF
DVANDTAMEVATEMVKELDIADREPTEIAAMIEQEIVRLVPGYKQHEYSYADDDDDDDVNGQPN
PFYYLSSSPTSSQGSLCGVGPTSSEGFPGPHGKVDWSRVVGGAGEGCDEDGVPRVRRAAGGGGG
VEPGHHLRRPPHPGRPPPHVRGGEPPRRPPPRRHHRLPRLLGPPLPPHLQLHHRALLLRHPPLL
PPPLPARQPPRRRRLGARHPPRPRLPPLPRRHPPRPQVRQHLRQRPPRPGQDRRPRPRRRPPRL
HLRPQRHRHAGVHGPRDVRRVLRRRRRRLLLRHVHARDAHQRVPLQRVRQPSADLQEGHRRQAP
RRLLPPHRRRRPPLHRPVPCRRRPPPLCRGAPARPLPLPASEPRRSQYHCSCHCAATAIAIGVQ
*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017