Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | Os12g0114100_circ_g.2 |
| ID in PlantcircBase | osa_circ_010357 |
| Alias | NA |
| Organism | Oryza sativa |
| Position | chr12: 700514-701819 JBrowse» |
| Reference genome | IRGSP-1.0.38 |
| Type | e-circRNA |
| Identification method | CIRCexplorer |
| Parent gene | Os12g0114100 |
| Parent gene annotation |
Similar to MAP kinase-like protein. (Os12t0114100-01);Similar to MAP kinase-like protein. (Os12t0114100-02) |
| Parent gene strand | - |
| Alternative splicing | Os12g0114100_circ_g.3 |
| Support reads | 2 |
| Tissues | root |
| Exon boundary | Yes-Yes |
| Splicing signals | CT-AC |
| Number of exons covered | Os12t0114100-01:1 Os12t0114100-02:1 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | NA |
| PMCS | 0.329542566 |
| Functional Information | |
|---|---|
| Coding potential | Y |
| Potential coding position |
701014-700630(+) 701588-700517(+) 701794-700974(-) 700668-700974(-) |
| Potential amino acid sequence |
MSNGIVIVVVLRRGEEGVEQELLGRGAVGGVDKAPADEAAGVGVGEEVEGVGELAGGDLLVDLR WVVALAVGVLVGEHLEHAHAEGVDVDADAVALVVHLGGHELRRADDAAGGGAAAEDGGEAEVAD LDLAEVAVDEDVVALEVAVDDAAGVEVGEAAEDGARPGGDGAAADARVAEAVGAEGAGGEELGD EVEGAAGGVDPGGVEGDDGVVAEVGEEAHLRVHAVEGVRGAEDVGDGGLVPRHLHPPQLVEPSV HRLHRTLPQHLRQLLTSQLFHVGQETPLTMWAPLRREIPERRSAKRRGSRRD*(+) MKLKVRREGWTQEAWKAMMASWRRSARRLTSAYMRWRASGVRRTSEMVAWFHATSTPRSSSNPR YTVFIAPFPSTSDNS*(+) MKTVYRGFDELRGVEVAWNQATISDVLRTPDALHRMYAEVSLLADLRHDAIIAFHASWVHPSRR TFNFITELFSSGTLRSYRLRYPRVSRRAVAAWARAILRGLAYLHSRGVIHRDLKCDNIFVNGHL GQVKIGDLGLAAVLRGCTSARSVIGTPEFMAPEMYDECYGVGVDVYSFGMCMLEMLTNEYPYSE CDNPAQIYKKVTAGKLPDAFYLLTDADARRFIGRCLVDAAHRPSAEELLLDPFLSPPQNHDDHN TIAHATAPPPPLPLACSNSSEEQEEEEAPAAKTTGMAITGKLNKEHDTIFLKVQIGGGGNVRNI YFPFDVANDTAMEVATEMVKELDIADREPTEIAAMIEQEIVRLVPGYKQHEYSYADDDDDDDVN GQPNPFYYLSSSPTSSQGSLCGVGPTSSEGFPGPHGKVDWSRVVGGAGEGCDEDGVPRVRRAAG GGGGVEPGHHLRRPPHPGRPPPHVRGGEPPRRPPPRRHHRLPRLLGPPLPPHLQLHHRALLLRH PPLLPPPLPARQPPRRRRLGARHPPRPRLPPLPRRHPPRPQVRQHLRQRPPRPGQDRRPRPRRR PPRLHLRPQRHRHAGVHGPRDVRRVLRRRRRRLLLRHVHARDAHQRVPLQRVRQPSADLQEGHR RQAPRRLLPPHRRRRPPLHRPVPCRRRPPPLCRGAPARPLPLPASEPRRSQYHCSCHCAATAIA IGVQ*(-) MTTTMMTSTDNLIPSTTSPLRRPPLRDLSAEWGPHRQRGFLAHMEKLTGQELSEVLGKGAMKTV YRGFDELRGVEVAWNQATISDVLRTPDALHRMYAEVSLLADLRHDAIIAFHASWVHPSRRTFNF ITELFSSGTLRSYRLRYPRVSRRAVAAWARAILRGLAYLHSRGVIHRDLKCDNIFVNGHLGQVK IGDLGLAAVLRGCTSARSVIGTPEFMAPEMYDECYGVGVDVYSFGMCMLEMLTNEYPYSECDNP AQIYKKVTAGKLPDAFYLLTDADARRFIGRCLVDAAHRPSAEELLLDPFLSPPQNHDDHNTIAH ATAPPPPLPLACSNSSEEQEEEEAPAAKTTGMAITGKLNKEHDTIFLKVQIGGGGNVRNIYFPF DVANDTAMEVATEMVKELDIADREPTEIAAMIEQEIVRLVPGYKQHEYSYADDDDDDDVNGQPN PFYYLSSSPTSSQGSLCGVGPTSSEGFPGPHGKVDWSRVVGGAGEGCDEDGVPRVRRAAGGGGG VEPGHHLRRPPHPGRPPPHVRGGEPPRRPPPRRHHRLPRLLGPPLPPHLQLHHRALLLRHPPLL PPPLPARQPPRRRRLGARHPPRPRLPPLPRRHPPRPQVRQHLRQRPPRPGQDRRPRPRRRPPRL HLRPQRHRHAGVHGPRDVRRVLRRRRRRLLLRHVHARDAHQRVPLQRVRQPSADLQEGHRRQAP RRLLPPHRRRRPPLHRPVPCRRRPPPLCRGAPARPLPLPASEPRRSQYHCSCHCAATAIAIGVQ *(-) |
| Sponge-miRNAs | NA |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | NA |
| Other Information | |
|---|---|
| References | Chu et al., 2017 |