Detail information of Zm00001d019172_circ_g.1


General Information
CircRNA Name Zm00001d019172_circ_g.1
ID in PlantcircBase zma_circ_009242
Alias zma_circ_0002698
Organism Zea mays
Position chr7: 20294598-20298809  JBrowse»
Reference genome AGPv4.38
Type   e-circRNA
Identification method find_circ
Parent gene Zm00001d019172
Parent gene annotation alpha/beta-Hydrolases superfamily protein
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues leaf, root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Zm00001d019172_T001:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AATCCATTCCACGGCCCTCGCTAATCAATTTGGCTGCCAGGTCTATCATTTCAGCTGTTTCCGG
AAGAGTTGCTCTATACTCCCTGTCACTTACTGGGGCctggcactgtgtggttgacatatgacca
agtctctgcctcagctgatcttcacttagatctgaactgaacatgtcatcatcacccatatatg
aacaaagg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGGCACTGTGTGGTTGACATATGACCAAGTCTCTGCCTCAGCTGATCTTCACTTAGATCTGAA
CTGAACATGTCATCATCACCCATATATGAACAAAGGGAGTGGTACCTACACATTTACTTGTATG
TATTAGAACACCACAGATGAGCAAACATTTTTAGTCCTTTCTAATTTTGTCATCCTAAGTTCCT
AACTTCTTCAAACAACAATTAGAGCTGGACATATTGGTCGTAGTTCAAAAAAAGGGGGGGTTGA
CAAATAAGTTTTTCTTAAACATGTTCAAAGGCATTGCTATTAAACAACAGGCCTAGCTCATAAG
CAATTCCTTCCAATAAATACTTACAAAATGTAGATTGTTTTAGTTTGACCCAAGTTAAACAGAC
AGAAAACTACTAAATACCTAAACATAATCCTAGGCACTACTTGACCATCCAAACTAACATCTCA
TATATTTTGTTTAGTTCTAGAGTCTAAAACTTTTGGATTCTACAGTCTCCCGCCACAACTCTAG
TCTCCTATTTACTCCTGCCTAACTTTCATCAACTAGCACTACATCCAAAAAAAAGTATACACCA
AAAGATTCTCTTGTATGTCCATTGTGACCTTATATCCATCACCAAGGCAAAAAGATAAAGGCTC
AAAGCTAATCCTTGATGTAATCTTATTCTAATCGGGAAGTCATCTATGTTCCCATCACTTATTT
GAACACTAGTGACAACATTGTTGTACATGTCCTTAATAAGTCCAACATACTTTGTTGGGACTTT
ATGTTTGTCCAAACCCCACCACATAACATTCCTTGGTGTTTTGTAATAAGCCTTCTCCAAGTTA
ATGAAAATCATGTGTAGATCCTTCTTTTGTTCCCTATACTGCTCCATCACTAACTTATTAAGAA
AATGGCTTTCATGGTTGACCTTCAGGCATGAAAACCAAATTGATTCAAAGAGATCCTCATTATT
CCTCTTAGACGATGCTCGATAACTCTCCCATAGCTTCATAATATGGATCATCAACTTAATTCCC
CGGTAATTAGTACAACTTTGAATACCTCCCTTATTCTTGTAGATTGGTACCAATATACTTCTCC
ACTCGACAGGCATCTTGTTCGACCAGAAGATATGGTCGAACAACTTGGTTAGCCATACTAAAGC
TATGTCCCCAAGGCATCTCCATACCTCAATTGAGATACCATCAGAGCCCATCGCCTTACCCCCT
TTCATCCTTTATAATGCCTCCATAACCTAAGATTCTTGGATCCTACGCACAAAACGCCTATTGG
TGTTACCAAAAGAGTCATCCAACTAAAAGATTGTGTCTCCATTCTCCCCATTGAACAATTTGTC
ATAATACTCTCGCTATCTATGCCTAATCTCATCCTCCTTCACTAAGAGGTGCTTTGTTTCATCC
TTAATACACTTAACTTGGTTGAAGTCCCTTGTCTTCCTCTCACAAACCCTAGCCATCCTACATA
TGTCCTCTCCTTCCTGGGTACTCAAACATTGGTAAAGGTCCTCGTACACCCTACCCTTTGCCAC
ACTTACAGCTCGCTTTGTCATCTTCTTTGCTACATTGTACTTCTCTATGTCCACACTCCTATTA
TGGTACATATGCCTGTAGCATTCTTTCTTCTCCTTAATAGCCCTTTACTTACTCCACATACCAC
TGAGGCCACCTTCTGAATGTAGGTTGCCATCTTCTCCCACATGTTGTTTGTCATCTTCTTCCTT
CCAAGTGTCCCTCTTTGATGGTCCTTTCCTTGAAGACTTTTGCCTTCTCCCCTTTCAATTTCCA
CCACTTTGTTCTTGCAATCTTAGCTTGTTTATCCTACACACATCTGAAAACGAAAGACTACTAC
CACAAGAAAATGTTGAGACAACATACTCCCTCGGTATCACCTTACAATTCAAGCATGTCTGTTT
ATCATCTCTTCGTGTAAGGACAAACGGATAGGATATAGGGGGGTCGGAGCTGTCACATCGTGCG
ACCACGGCAAGGGTGGTAAGATCCCGTATGGTGAGCCCCTAGGGATCGAACTCCATGGAATAAT
GGTTGTCAATGGTGAAGGGACGAACCGAGAGAAGATTTTGTATGATGTTGGGGGCAACAAGGAT
GTTGTTGAGGTACAAAGGATCAAGAAGAACCATGCCGCCTACTGCGGTGGCAGGTAGAGTCGGT
CCATTACCGACAATGATGAAAGAAGGGAAAGTGGGGTCGTGAGGATGGGGTAAGAGACAATACT
GAGGTTAGGAGTGGTGTGGTACGAGGCTAGAGTCGGCAACCAAGTCGGTAATAGTAGTGGTGGT
GGGCCGCGATGACATGGGGTACGAGGAGATAGACAGGGGAGGCACCCCCATAGTCTCCAGGGTG
GCCACTGGGGCCGCTAGTGGGGAGCAAGTTGATGACGAGCATGAGCAGGGGACCAGGGGTCACG
ACAAGGCCTATATCGTCATGGAGATAATCTCATTGCTGCAAAACAGAAGTGGCCCTAGAGCGTG
GCGCCCCTCCTGAGGGTGGACAGGGGCCGAAGGGTGGCAGAGCTCGACGCAATAACAGAGAACC
GGGTTCATTTCCCAATCAAAGGCCACAAACGAGCCTTGGAGAAATTGCTCGTTGTGAAGGGAGG
GAGACACGTGGACCGCGGCAGAGCGAAGGACGGGCGTCGAGGGAGCGGTCACGAGGAGGGAGGA
GCGCACGCCAGAACCGGGCTCACGTGGAATGAGGGCTAACGGGGGCCCAAGCAGCTGGGATGGT
GCACGCGGAGGCGGGAGCAAAGCTAGGTTGAACGTAGTGGATGCAAATGCACCCCCACAAAATG
TAAATCCTATAGATTTAGTTAAAATTTCACCATATATGCACCCCTAGAAAAAAAATCTTATGCA
CTCACAAGGCTAAATGCACCCTCAATTTTGCTCTAGCTTCGCCAGTGCACGGAGGTGATGGGAC
ACGACGGATGCAAGGATGAGCATGCCAGCCAGGAGAGCAGAGCGGAAGAGGAGCACTACGAGGA
GCGACAGGAGAGAGGCTGGGAAGGTACTGGCGGCTAGGGGAGGAAAGGAGAGAAAATGGCTTGA
TACCATGTTGGAGATAAAACCCTAACCCTAATTGGGCAGGGGATATATTATATCCAAGCACATG
GGCCAAGGCCCATAATATGCTAACAATAACTAGTATGTTATGAAGAGGAGGGGGCAGCTGCAAC
TCCAATCGCATCAGCCGCTTTTCTTTCAAACACAGGCTCATTTTTTTCTCCTCCCTGTGCCAGA
TTTTCCTCCCCGGTGTCTGGTCAGTCTCTGCCCACCCCTTCCCAGTCAGTTCCTCCTGCGACCT
GCCTTCACCTGTCTCCACCTGGTCCCCAACCGACGCCTATAGCCTAGACCTGGAGTCAAGGAGC
AATGTCTGTCCTAAAGTTGCAGCATGCGTGAATACAACTCAAACCATGGATTGTTTGCCACTGC
TATTTGCCAATTTATGATCATGTTTACATATATTTACACCATATATAAATAGCTGATCAGCCCA
TCTAGGCACATGGATGACTAAATGTCCAACTAGCCGACTAGGACTAACTTATTGACCCTGATTG
ACGACTAATCGTGATTACTCGTCTGATTGGTGGTCTTACGACTAGCCTTGACCACGATCTGATA
ACATTGATCGATAATACAGTGGCATGTATGGCCAATGATGCCACTAATGGACACAGTTGACAAA
TAAGCAGTATCTCTTTTGCAAAAAGGGATAAATGAATTGCTTATAACATTAGAGTCAATCTGTG
GTTCATGCATCTGGTTAATTAGGGGAACCTTTGCTAGTTGAAGTAGGATTTTGGCATACAAATG
TGGCGTGCGTGTTAAACAAACAACTGTATCAACCTTTATTGAACCAGGCATGCCCAATTTCAAT
TAAAGCAACAGAAACAACTGTCTTAAAGAAGCGGGAAAATGACACAAAAAGCATAATATCTAAA
TTAGAAACAGTTAACTCATTTTGAGAAGCTACCAACAATGCCAACAAAACCTCAGTACAATATC
TATATTCTGTAACTCAATCATAAACATTATATACCTGTAGGCAGTAATAGGAGCATCTGAGTTT
GCTTTTCTAGGCATCAAATCCATTCCACGGCCCTCGCTAATCAATTTGGCTGCCAGGTCTATCA
TTTCAGCTGTTTCCGGAAGAGTTGCTCTATACTCCCTGTCACTTACTGGGGC
Conservation Information
Conserved circRNAs NA
PMCS 0.128117393
Functional Information
Coding potential Y
Potential coding position 20298760-20294600(-)
Potential amino acid sequence MIDLAAKLISEGRGMDLMPRKANSDAPITAYRYHSLCSYMGDDDMFSSDLSEDQLRQRLGHMST
TQCQAPVSDREYRATLPETAEMIDLAAKLISEGRGMDLMPRKANSDAPITAYRYHSLCSYMGDD
DMFSSDLSEDQLRQRLGHMSTTQCQAPVSDREYRATLPETAEMIDLAAKLISEGRGMDLMPRKA
NSDAPITAYRYHSLCSYMGDDDMFSSDLSEDQLRQRLGHMSTTQCQAPVSDREYRATLPETAEM
IDLAAKLISEGRGMDLMPRKANSDAPITAYRYHSLCSYMGDDDMFSSDLSEDQLRQRLGHMSTT
QCQ(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ma et al., 2021b